PANTHER Gene Information

Gene Symbol(s):

C1d

Organism:

Rattus norvegicus

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Gene Name:

Nuclear nucleic acid-binding protein C1D

Gene ID:

1560600

Protein ID:

B5DEI6

Persistent Id:

PTN000393951

Alternate Ids:

XP_017454616(refSeq)	289810(GeneID)
157820245(GI)	B5DEI6_RAT(UniProtKB-ID)
B5DEI6(Synonym)	ENSRNOG00000005982(Ensembl)
1560600(RGD)	ENSRNOT00000096935(Ensembl_TRS)
ENSRNOP00000077143(Ensembl_PRO)
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PANTHER Classification

PANTHER Family:	SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR (PTHR15341)
PANTHER Subfamily:	NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D (PTHR15341:SF3)
PANTHER GO-slim Molecular Function:	RNA binding DNA binding
PANTHER GO-slim Biological Process:	maturation of 5.8S rRNA regulation of gene expression
PANTHER GO-slim Cellular Component:	nucleolus exosome (RNase complex)
PANTHER protein class:	transcription cofactor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	DNA binding, nuclear receptor binding, RNA binding, transcription corepressor activity
GO BP Complete:	biological_process, maturation of 5.8S rRNA, negative regulation of DNA-templated transcription
GO CC Complete:	cytoplasm, transcription repressor complex, nucleolus, nucleoplasm

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

rRNA processing, Major pathway of rRNA processing in the nucleolus and cytosol, Metabolism of RNA, rRNA processing in the nucleus and cytosol

Orthologs

ID	Organism	Type
HUMAN\|HGNC=29911\|UniProtKB=Q13901	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000023558.5\|UniProtKB=H2RB90	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000022296.2\|UniProtKB=A0A2I2ZB61	Gorilla gorilla gorilla	O
GORGO\|Ensembl=ENSGGOG00000025808.2\|UniProtKB=A0A2I2YJS5	Gorilla gorilla gorilla	O
GORGO\|Ensembl=ENSGGOG00000025982.2\|UniProtKB=G3S6K9	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000043184.2\|UniProtKB=A0A1D5RGU8	Macaca mulatta	O
MACMU\|Ensembl=ENSMMUG00000038443.2\|UniProtKB=A0A1D5Q151	Macaca mulatta	O
MACMU\|Ensembl=ENSMMUG00000017209.4\|UniProtKB=F7HGG1	Macaca mulatta	LDO
MOUSE\|MGI=MGI=1927354\|UniProtKB=O35473	Mus musculus	LDO
BOVIN\|Ensembl=ENSBTAG00000049002\|UniProtKB=Q32PE4	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000035701.2\|UniProtKB=A0A287BJ29	Sus scrofa	O
PIG\|Ensembl=ENSSSCG00000039331.3\|UniProtKB=A0A4X1WBP4	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000002187.4\|UniProtKB=A0A9L0RCY9	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000028933.4\|UniProtKB=M3XFL9	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845022766.1\|UniProtKB=A0A8I3PJR3	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000003561.2\|UniProtKB=F7GBA7	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000008385.3\|UniProtKB=A0A6I8NFX3	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010017755.1\|UniProtKB=A0A8V0Z4G5	Gallus gallus	O
CHICK\|Gene_ORFName=RCJMB04_33m12\|UniProtKB=Q5ZHS3	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000001337.3\|UniProtKB=G1K9A3	Anolis carolinensis	LDO
XENLA\|Gene=c1d\|UniProtKB=Q3KPR1	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-1014449\|UniProtKB=A0A6I8PUJ2	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000021968.1\|UniProtKB=A0A3B3IN79	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-041024-8\|UniProtKB=Q5XJ97	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000016024.1\|UniProtKB=W5NGH6	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000020906.1\|UniProtKB=H2Y058	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118420032\|UniProtKB=A0A9J7LIC7	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC575510\|UniProtKB=A0A7M7R9F6	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00021785\|UniProtKB=Q9N3J4	Caenorhabditis elegans	LDO
CAEBR\|WormBase=WBGene00087189\|UniProtKB=B6IGJ8	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00276820\|UniProtKB=A0A2A6CZW8	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0030711\|UniProtKB=Q9VXL4	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP007147\|UniProtKB=A7URQ1	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC006234\|UniProtKB=D6WVJ5	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_304365\|UniProtKB=E9GL32	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW000864\|UniProtKB=B7P2K3	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG174618\|UniProtKB=T1F8A9	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g210739\|UniProtKB=A7SDV0	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG57253\|UniProtKB=B3RYX8	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_31250\|UniProtKB=A9USN1	Monosiga brevicollis	LDO
YEAST\|SGD=S000001123\|UniProtKB=P38801	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_ADR297W\|UniProtKB=Q759I1	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000186441\|UniProtKB=A0A1D8PE95	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_F07755g\|UniProtKB=Q6C2H9	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_10590\|UniProtKB=C8VAR8	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_3G06380\|UniProtKB=Q4WWM3	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU16328\|UniProtKB=V5INT4	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_13164\|UniProtKB=A7F6D5	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_00171\|UniProtKB=Q0V743	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPCC1739.07\|UniProtKB=O74469	Schizosaccharomyces pombe	LDO
CRYNJ\|EnsemblGenome=CNA01840\|UniProtKB=Q5KPR2	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_00576\|UniProtKB=A0A0D1D1A6	Ustilago maydis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_27661\|UniProtKB=F4PBJ4	Batrachochytrium dendrobatidis	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_158214\|UniProtKB=F1A131	Dictyostelium purpureum	LDO
PLAF7\|EnsemblGenome=PF3D7_1445500\|UniProtKB=Q8IL18	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00007563001\|UniProtKB=A0CH56	Paramecium tetraurelia	LDO
PHYRM\|Gene=H3H421_PHYRM\|UniProtKB=H3H421	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_05g242900v5\|UniProtKB=A0A2K3DSE2	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00019p00040900\|UniProtKB=W1PGE2	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_8G00010\|UniProtKB=A0A0K9NJR7	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma03_g13110\|UniProtKB=A0A804IBI2	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_014470mg\|UniProtKB=K3YJQ1	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3007G098100\|UniProtKB=A0A1Z5R918	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb353150\|UniProtKB=K7V4Z5	Zea mays	O
MAIZE\|EnsemblGenome=Zm00001eb177850\|UniProtKB=B6TNZ4	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os08g0270200\|UniProtKB=Q6YX09	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_3g19450v3\|UniProtKB=A0A0Q3LTX8	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.7HG0653720\|UniProtKB=A0A8I6Z785	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS7B02G012500\|UniProtKB=A0A3B6SBM0	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS7A02G116100\|UniProtKB=A0A3B6RDK2	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS7D02G110500\|UniProtKB=A0A3B6TE65	Triticum aestivum	LDO
NELNU\|Gene=LOC104603260\|UniProtKB=A0A1U8ARD1	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110775031\|UniProtKB=A0A9R0HR30	Spinacia oleracea	LDO
HELAN\|Gene_ORFName=HanXRQr2_Chr13g0597101\|UniProtKB=A0A9K3HAZ3	Helianthus annuus	O
HELAN\|Gene_ORFName=HannXRQ_Chr13g0411011\|UniProtKB=A0A251STQ5	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C500246660\|UniProtKB=A0A9R1V992	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a013567mg\|UniProtKB=A0A022Q242	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_19347\|UniProtKB=A0A1U8H9W1	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG401028727\|UniProtKB=M1CSV0	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc07g008750.3\|UniProtKB=A0A3Q7H860	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107825425\|UniProtKB=A0A1S4D2V4	Nicotiana tabacum	O
TOBAC\|Gene=LOC107828515\|UniProtKB=A0A1S4DDB4	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi04g00603\|UniProtKB=F6H339	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_C02606\|UniProtKB=A0A059CRX5	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=DARMORV10_A09P06310.1\|UniProtKB=A0A078G498	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra009814\|UniProtKB=A0A397Z8H4	Brassica campestris	O
BRACM\|EnsemblGenome=Bra036531\|UniProtKB=M4F622	Brassica campestris	LDO
ARATH\|TAIR=locus=2179310\|UniProtKB=Q93VA9	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107906821\|UniProtKB=A0A1U8JGL2	Gossypium hirsutum	O
GOSHI\|Gene=LOC107958981\|UniProtKB=A0A1U8PGW2	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_036901\|UniProtKB=A0A061GIF8	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g028255mg\|UniProtKB=A0A067FJ88	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_018G018100v3\|UniProtKB=B9IL67	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_006G264700v3\|UniProtKB=B9HB62	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_03G008100\|UniProtKB=A0A2C9W3B8	Manihot esculenta	O
MANES\|EnsemblGenome=MANES_16G130200\|UniProtKB=A0A251J0R6	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0920830\|UniProtKB=B9RNV0	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_14G101700\|UniProtKB=C6T2F3	Glycine max	O
MEDTR\|EnsemblGenome=MTR_1g014130\|UniProtKB=G7I884	Medicago truncatula	O
SOYBN\|EnsemblGenome=GLYMA_06G061100\|UniProtKB=I1K8L9	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_3g105925\|UniProtKB=G7J9T9	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr08_00800\|UniProtKB=A0A2I4FPU0	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_4G651890\|UniProtKB=A0A0A0L118	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_1G394400\|UniProtKB=M5XWS7	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_405733\|UniProtKB=D8QZJ3	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_442808\|UniProtKB=D8RWB5	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c2_14120\|UniProtKB=A9RV03	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0130s0032\|UniProtKB=A0A2R6W8C9	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_000370420\|UniProtKB=A0A1Y1HT97	Klebsormidium nitens	LDO