PANTHER Gene Information

Gene Symbol(s):

col28a1

Organism:

Danio rerio

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Gene Name:

Collagen alpha-1(XXVIII) chain isoform X1 (Fragment)

Gene ID:

ZDB-GENE-070705-84

Protein ID:

C0H5W1

Persistent Id:

PTN001167020

Alternate Ids:

C0H5W1_DANRE(UniProtKB-ID)	C0H5W1(Synonym)
225310547(GI)	XP_021323742(refSeq)
CAQ19234(EMBL-CDS)	ENSDARG00000077084(Ensembl)
ENSDART00000112808(Ensembl_TRS)	CR318650(EMBL)
ZDB-GENE-070705-84(ZFIN)	ENSDARP00000102543(Ensembl_PRO)
555428(GeneID)
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PANTHER Classification

PANTHER Family:	COLLAGEN ALPHA (PTHR24023)
PANTHER Subfamily:	MACROPHAGE RECEPTOR MARCO (PTHR24023:SF1103)
PANTHER GO-slim Molecular Function:	extracellular matrix structural constituent
PANTHER GO-slim Biological Process:	extracellular matrix organization
PANTHER GO-slim Cellular Component:	extracellular space collagen-containing extracellular matrix
PANTHER protein class:	extracellular matrix structural protein

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	serine-type endopeptidase inhibitor activity, extracellular matrix structural constituent conferring tensile strength
GO BP Complete:	extracellular matrix organization, cell adhesion
GO CC Complete:	basement membrane, extracellular space, collagen trimer, extracellular region

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Collagen formation, Collagen chain trimerization, Extracellular matrix organization, Collagen biosynthesis and modifying enzymes

Orthologs

ID	Organism	Type
MOUSE\|MGI=MGI=1309998\|UniProtKB=Q60754	Mus musculus	LDO
RAT\|RGD=1589662\|UniProtKB=M0R9F7	Rattus norvegicus	LDO
CIOIN\|Ensembl=ENSCING00000008423.3\|UniProtKB=F6UEW3	Ciona intestinalis	O
BRAFL\|Gene=LOC118403826\|UniProtKB=A0A9J7HIB0	Branchiostoma floridae	O
STRPU\|EnsemblGenome=LOC762753\|UniProtKB=A0A7M7PM44	Strongylocentrotus purpuratus	O
STRPU\|EnsemblGenome=LOC105445661\|UniProtKB=A0A7M7LWH5	Strongylocentrotus purpuratus	O
STRPU\|EnsemblGenome=LOC575353\|UniProtKB=A0A7M7N1V0	Strongylocentrotus purpuratus	O
STRPU\|EnsemblGenome=LOC576214\|UniProtKB=A0A7M7N489	Strongylocentrotus purpuratus	O
STRPU\|EnsemblGenome=LOC589794\|UniProtKB=A0A7M7PNY6	Strongylocentrotus purpuratus	O
CAEEL\|WormBase=WBGene00000674\|UniProtKB=O76368	Caenorhabditis elegans	O
CAEBR\|Gene_ORFName=CBG01652\|UniProtKB=A8WR59	Caenorhabditis briggsae	O
CAEEL\|WormBase=WBGene00000689\|UniProtKB=Q9N3X9	Caenorhabditis elegans	O
CAEEL\|WormBase=WBGene00002280\|UniProtKB=P17140	Caenorhabditis elegans	O
CAEBR\|Gene_ORFName=CBG16372\|UniProtKB=A8XNK9	Caenorhabditis briggsae	O
PRIPA\|EnsemblGenome=WBGene00107315\|UniProtKB=A0A2A6C679	Pristionchus pacificus	O
DROME\|FlyBase=FBgn0260660\|UniProtKB=M9ND55	Drosophila melanogaster	O
ANOGA\|EnsemblGenome=AGAP029898\|UniProtKB=A0A903XVV4	Anopheles gambiae	O
ANOGA\|EnsemblGenome=AGAP009599\|UniProtKB=A0A1S4H1L4	Anopheles gambiae	O
ANOGA\|EnsemblGenome=AGAP009201\|UniProtKB=A0A1S4H170	Anopheles gambiae	O
TRICA\|EnsemblGenome=TC014326\|UniProtKB=D6WLB9	Tribolium castaneum	O
TRICA\|EnsemblGenome=TC031632\|UniProtKB=A0A139WAT8	Tribolium castaneum	O
DAPPU\|EnsemblGenome=DAPPUDRAFT_307295\|UniProtKB=E9H1N7	Daphnia pulex	O
IXOSC\|EnsemblGenome=ISCW022619\|UniProtKB=B7Q9Z7	Ixodes scapularis	O
HELRO\|EnsemblGenome=HelroG191307\|UniProtKB=T1FSV3	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG109453\|UniProtKB=T1EET9	helobdella robusta	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g80945\|UniProtKB=A7RG67	Nematostella vectensis	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g238343\|UniProtKB=A7RHP3	Nematostella vectensis	O
MONBE\|EnsemblGenome=MONBRDRAFT_11132\|UniProtKB=A9V8A7	Monosiga brevicollis	O
MONBE\|EnsemblGenome=MONBRDRAFT_28937\|UniProtKB=A9V9M1	Monosiga brevicollis	O
NITMS\|EnsemblGenome=Nmar_0682\|UniProtKB=A9A489	Nitrosopumilus maritimus	O