PANTHER Gene Information

Gene Symbol(s):

Hoxd4

Organism:

Rattus norvegicus

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Gene Name:

Homeo box D4

Gene ID:

1309690

Protein ID:

D4ACE1

Persistent Id:

PTN000675413

Alternate Ids:

288153(GeneID)	XM_008761887(refSeq)
672045754(GI)	ENSRNOP00000002145(Ensembl_PRO)
1309690(RGD)	D4ACE1_RAT(UniProtKB-ID)
D4ACE1(Synonym)	ENSRNOT00000002145(Ensembl_TRS)
ENSRNOG00000001578(Ensembl)
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PANTHER Classification

PANTHER Family:	HOMEOTIC PROTEIN DEFORMED (PTHR45771)
PANTHER Subfamily:	HOMEOBOX PROTEIN HOX-D4 (PTHR45771:SF5)
PANTHER GO-slim Molecular Function:	DNA-binding transcription factor activity, RNA polymerase II-specific RNA polymerase II cis-regulatory region sequence-specific DNA binding
PANTHER GO-slim Biological Process:	embryonic organ development skeletal system development embryonic morphogenesis positive regulation of transcription by RNA polymerase II chordate embryonic development animal organ morphogenesis anterior/posterior pattern specification
PANTHER GO-slim Cellular Component:	nucleoplasm
PANTHER protein class:	homeodomain transcription factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II transcription regulatory region sequence-specific DNA binding, DNA-binding transcription activator activity, RNA polymerase II-specific, sequence-specific double-stranded DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific
GO BP Complete:	stem cell differentiation, anterior/posterior pattern specification, embryonic organ development, positive regulation of transcription by RNA polymerase II, embryonic skeletal system morphogenesis
GO CC Complete:	cell junction, nucleoplasm

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=5138\|UniProtKB=P09016	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000051862\|UniProtKB=A2T6X6	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000042533\|UniProtKB=A1YER7	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000060947.1\|UniProtKB=A0A5F8A5A0	Macaca mulatta	LDO
MOUSE\|MGI=MGI=96208\|UniProtKB=P10628	Mus musculus	LDO
BOVIN\|Ensembl=ENSBTAG00000039581.2\|UniProtKB=A7MBD6	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000015984.5\|UniProtKB=F1RZG0	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000038429.2\|UniProtKB=A0A9L0RJK2	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000045772.2\|UniProtKB=A0A337SMN8	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845019072.1\|UniProtKB=A0A8I3P959	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000009598.4\|UniProtKB=F7A8R4	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000037495.1\|UniProtKB=A0A6I8PMN2	Ornithorhynchus anatinus	LDO
CHICK\|Gene=HOXD4\|UniProtKB=P17278	Gallus gallus	O
CHICK\|Ensembl=ENSGALG00010024746.1\|UniProtKB=F1NZJ3	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000017905.2\|UniProtKB=H9GPV6	Anolis carolinensis	LDO
XENLA\|Gene=hoxd4.L\|UniProtKB=A0A1L8EWI5	Xenopus laevis	O
XENLA\|Gene=LOC108703007\|UniProtKB=A0A1L8EPB5	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-478962\|UniProtKB=F6VY66	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000017548.2\|UniProtKB=H2MT59	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-980526-214\|UniProtKB=O57374	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000007074.1\|UniProtKB=W5MJK2	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000006962.3\|UniProtKB=Q4H3C6	Ciona intestinalis	O
CIOIN\|Ensembl=ENSCING00000001363.3\|UniProtKB=O18313	Ciona intestinalis	O
BRAFL\|Gene_ORFName=BRAFLDRAFT_129968\|UniProtKB=C3XTD6	Branchiostoma floridae	O
STRPU\|EnsemblGenome=LOC100888432\|UniProtKB=A0A7M7GJH4	Strongylocentrotus purpuratus	O
CAEEL\|WormBase=WBGene00003102\|UniProtKB=P10038	Caenorhabditis elegans	O
CAEBR\|Gene_ORFName=CBG00043\|UniProtKB=A8WM72	Caenorhabditis briggsae	O
CAEEL\|WormBase=WBGene00003024\|UniProtKB=P34684	Caenorhabditis elegans	O
CAEBR\|WormBase=WBGene00030808\|UniProtKB=Q9GZ04	Caenorhabditis briggsae	O
PRIPA\|EnsemblGenome=WBGene00109569\|UniProtKB=O61575	Pristionchus pacificus	O
DROME\|FlyBase=FBgn0000439\|UniProtKB=P07548	Drosophila melanogaster	O
ANOGA\|EnsemblGenome=AGAP004646\|UniProtKB=A7UUJ0	Anopheles gambiae	O
DROME\|FlyBase=FBgn0003339\|UniProtKB=P09077	Drosophila melanogaster	O
ANOGA\|EnsemblGenome=AGAP004659\|UniProtKB=O76760	Anopheles gambiae	O
TRICA\|EnsemblGenome=TC000920\|UniProtKB=D6W938	Tribolium castaneum	O
TRICA\|EnsemblGenome=TC000917\|UniProtKB=Q9BK04	Tribolium castaneum	O
DAPPU\|EnsemblGenome=DAPPUDRAFT_347211\|UniProtKB=E9G1I7	Daphnia pulex	O
DAPPU\|EnsemblGenome=DAPPUDRAFT_347317\|UniProtKB=E9G1I9	Daphnia pulex	O
IXOSC\|EnsemblGenome=ISCW021072\|UniProtKB=B7Q9U3	Ixodes scapularis	O
HELRO\|EnsemblGenome=HelroG88194\|UniProtKB=T1G6Z6	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG90841\|UniProtKB=T1G7W8	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG91666\|UniProtKB=T1G874	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG148863\|UniProtKB=T1EKC0	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG92485\|UniProtKB=T1G8H3	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG76537\|UniProtKB=T1G2L2	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG126217\|UniProtKB=T1EH89	helobdella robusta	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g101740\|UniProtKB=A7S277	Nematostella vectensis	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g196876\|UniProtKB=A7RGM8	Nematostella vectensis	O