PANTHER Gene Information

Gene Symbol(s):

VIP2

Organism:

Arabidopsis thaliana

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Gene Name:

Protein PAF1 homolog

Gene ID:

2017879

Protein ID:

F4HQA1

Persistent Id:

PTN000573350

Alternate Ids:

AC010793(EMBL)	ELF7{ECO:0000303\|PubMed:15520273}(Synonym)
VIP2{ECO:0000303\|PubMed:15472079}(Symbol)	AT1G79730(Ensembl_TRS)
AT1G79730(Ensembl)	AEE36292(EMBL-CDS)
locus:2017879(TAIR)	22330753(GI)
NP_178091(refSeq)	AT1G79730(Ensembl_PRO)
Q8RW91(AltAccession)	844312(GeneID)
PAF1_ARATH(UniProtKB-ID)
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PANTHER Classification

PANTHER Family:	RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG (PTHR23188)
PANTHER Subfamily:	RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG (PTHR23188:SF12)
PANTHER GO-slim Molecular Function:	RNA polymerase II complex binding chromatin binding
PANTHER GO-slim Biological Process:
PANTHER GO-slim Cellular Component:	Cdc73/Paf1 complex
PANTHER protein class:

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	protein binding, chromatin binding, RNA polymerase II complex binding
GO BP Complete:	double-strand break repair via homologous recombination, negative regulation of flower development, transcription elongation by RNA polymerase II
GO CC Complete:	nucleus, Cdc73/Paf1 complex

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=25459\|UniProtKB=Q8N7H5	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000010964.3\|UniProtKB=G2HE44	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000001843.3\|UniProtKB=A0A2I2Z5M9	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000005552.4\|UniProtKB=G7NNK8	Macaca mulatta	LDO
MOUSE\|MGI=MGI=1923988\|UniProtKB=Q8K2T8	Mus musculus	LDO
RAT\|RGD=1306219\|UniProtKB=Q4V886	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000020428\|UniProtKB=Q2KJ14	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000022442.4\|UniProtKB=A0A5G2R5V9	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000008008.4\|UniProtKB=A0A9L0S013	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000010740.5\|UniProtKB=M3WDU4	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845004690.1\|UniProtKB=A0A8I3MY63	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000002322.3\|UniProtKB=F6YD76	Monodelphis domestica	O
MONDO\|Ensembl=ENSMODG00000013486.4\|UniProtKB=F7F917	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000051185.1\|UniProtKB=A0A6I8PGP1	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010009085.1\|UniProtKB=A0A8V0XVQ2	Gallus gallus	LDO
XENLA\|Gene=paf1\|UniProtKB=A2BD83	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-5797651\|UniProtKB=Q6P2Y1	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000004982.2\|UniProtKB=A0A3B3H3W4	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-050506-101\|UniProtKB=Q4U0S5	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000014601.1\|UniProtKB=W5NBG0	lepisosteus oculatus	LDO
BRAFL\|Gene=LOC118420676\|UniProtKB=A0A9J7MXC3	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC586079\|UniProtKB=A0A7M7PVP1	Strongylocentrotus purpuratus	LDO
STRPU\|EnsemblGenome=LOC580362\|UniProtKB=A0A7M7RGE6	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00008338\|UniProtKB=P90783	Caenorhabditis elegans	LDO
CAEBR\|Gene_ORFName=CBG23232\|UniProtKB=A8Y4E4	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00089981\|UniProtKB=A0A2A6BEN8	Pristionchus pacificus	O
PRIPA\|EnsemblGenome=WBGene00118366\|UniProtKB=A0A2A6CAW3	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0010750\|UniProtKB=Q9VN55	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP001302\|UniProtKB=Q7PXA3	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC034549\|UniProtKB=A0A139WMF5	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_302221\|UniProtKB=E9HMB3	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW015535\|UniProtKB=B7QNW4	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG93221\|UniProtKB=T1G8U5	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g204576\|UniProtKB=A7RZS4	Nematostella vectensis	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g99040\|UniProtKB=A7RZS5	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG33941\|UniProtKB=B3SDF8	Trichoplax adhaerens	LDO
YEAST\|SGD=S000000483\|UniProtKB=P38351	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_AEL157W\|UniProtKB=Q758A9	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000196860\|UniProtKB=Q59Y36	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_E22022g\|UniProtKB=Q6C509	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_05910\|UniProtKB=Q5B0M0	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_2G11000\|UniProtKB=Q4X170	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU06446\|UniProtKB=Q7RYX1	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_00234\|UniProtKB=A7E4L2	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_08403\|UniProtKB=Q0UIL1	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPAC664.03\|UniProtKB=Q9US06	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_01610\|UniProtKB=B6JYE9	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CNE03080\|UniProtKB=Q5KGM6	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_04610\|UniProtKB=A0A0D1DYB0	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_02938\|UniProtKB=E3JWS2	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_25627\|UniProtKB=F4P530	Batrachochytrium dendrobatidis	LDO
DICDI\|dictyBase=DDB_G0269412\|UniProtKB=Q55E33	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_52960\|UniProtKB=F0ZAM7	Dictyostelium purpureum	LDO
THAPS\|EnsemblGenome=THAPSDRAFT_24729\|UniProtKB=B8CBV1	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3GJ50_PHYRM\|UniProtKB=H3GJ50	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_12g520250v5\|UniProtKB=A0A2K3D431	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00001p00252660\|UniProtKB=W1NLN1	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_62G00030\|UniProtKB=A0A0K9NTK5	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma03_g00250\|UniProtKB=A0A804I6V2	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_013418mg\|UniProtKB=K3YGQ0	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3007G046200\|UniProtKB=C5YH07	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb172540\|UniProtKB=A0A804NMY1	Zea mays	LDO
MAIZE\|EnsemblGenome=Zm00001eb415930\|UniProtKB=A0A1D6J077	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os08g0157100\|UniProtKB=Q6ZD92	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_3g16550v3\|UniProtKB=A0A0Q3LS56	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.3HG0219650\|UniProtKB=F2DHX5	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS3A02G009400\|UniProtKB=A0A3B6E8S5	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS3D02G002000\|UniProtKB=A0A3B6GNL8	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS3B02G012200\|UniProtKB=A0A3B6FI41	Triticum aestivum	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.7HG0699250\|UniProtKB=A0A8I7BJ98	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS7A02G299200\|UniProtKB=A0A3B6RJX4	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS7B02G200900\|UniProtKB=A0A3B6SHI8	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS7D02G026600\|UniProtKB=A0A3B6T7T5	Triticum aestivum	LDO
NELNU\|Gene=LOC104601298\|UniProtKB=A0A1U8AKR2	Nelumbo nucifera	O
NELNU\|Gene=LOC104597147\|UniProtKB=A0A1U7ZX59	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110775862\|UniProtKB=A0A9R0HSU6	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr02g0047151\|UniProtKB=A0A251VC96	Helianthus annuus	O
LACSA\|Gene_ORFName=LSAT_V11C600316430\|UniProtKB=A0A9R1V747	Lactuca sativa	O
LACSA\|Gene_ORFName=LSAT_V11C100015060\|UniProtKB=A0A9R1WLC1	Lactuca sativa	O
HELAN\|EnsemblGenome=HanXRQr2_Chr09g0416231\|UniProtKB=A0A251U3K7	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C400195970\|UniProtKB=A0A9R1XFD6	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a007756mg\|UniProtKB=A0A022S0P8	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_11029\|UniProtKB=A0A2G3A401	Capsicum annuum	O
CAPAN\|EnsemblGenome=T459_11030\|UniProtKB=A0A2G3A3W1	Capsicum annuum	LDO
SOLLC\|EnsemblGenome=Solyc03g121010.3\|UniProtKB=A0A3Q7FX27	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107826626\|UniProtKB=A0A1S4D6V2	Nicotiana tabacum	O
TOBAC\|Gene=LOC107768468\|UniProtKB=A0A1S3XT06	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi09g00288\|UniProtKB=F6HYA2	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_F03078\|UniProtKB=A0A059BVK6	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=GSBRNA2T00032366001\|UniProtKB=A0A078FEA3	Brassica napus	O
BRANA\|Gene_ORFName=DARMORV10_A10P33120.1\|UniProtKB=A0A078HUB7	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra009582\|UniProtKB=M4CZD5	Brassica campestris	LDO
GOSHI\|Gene=LOC107952365\|UniProtKB=A0A1U8NVX2	Gossypium hirsutum	O
GOSHI\|Gene=LOC107950655\|UniProtKB=A0A1U8NQA9	Gossypium hirsutum	O
GOSHI\|Gene=LOC107891711\|UniProtKB=A0A1U8I1E9	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_028891\|UniProtKB=A0A061GIM5	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g005794mg\|UniProtKB=A0A067EKR4	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_003G048900v3\|UniProtKB=A0A2K2B1P0	Populus trichocarpa	LDO
POPTR\|EnsemblGenome=POPTR_001G190000v3\|UniProtKB=A0A2K2C061	Populus trichocarpa	O
MANES\|EnsemblGenome=MANES_04G134200\|UniProtKB=A0A2C9W4Q9	Manihot esculenta	O
MANES\|EnsemblGenome=MANES_11G033700\|UniProtKB=A0A2C9UZI9	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_1489440\|UniProtKB=B9RQE5	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_08G201000\|UniProtKB=I1KV19	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_07G015500\|UniProtKB=I1KGI6	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_8g014460\|UniProtKB=G7LGN7	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr12_18650\|UniProtKB=A0A2I4GHA0	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_7G452360\|UniProtKB=A0A0A0KCT6	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_1G178600\|UniProtKB=A0A251QZB5	Prunus persica	O
PRUPE\|EnsemblGenome=PRUPE_3G059100\|UniProtKB=M5WYJ1	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_446192\|UniProtKB=D8SPG6	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_441016\|UniProtKB=D8RG11	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c1_7460\|UniProtKB=A0A7I4BX21	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0123s0029\|UniProtKB=A0A2R6W9M2	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_002290070\|UniProtKB=A0A1Y1I9E3	Klebsormidium nitens	LDO