PANTHER Gene Information

Gene Symbol(s):

SKI2

Organism:

Arabidopsis thaliana

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Gene Name:

DExH-box ATP-dependent RNA helicase DExH11

Gene ID:

2075566

Protein ID:

F4JAA5

Persistent Id:

PTN002281701

Alternate Ids:

HELPS{ECO:0000303\|PubMed:21535471}(Synonym)	SKI2{ECO:0000303\|PubMed:22511887}(Symbol)
AT3G46960(Ensembl_PRO)	locus:2075566(TAIR)
AT3G46960(Ensembl_TRS)	823849(GeneID)
CAB51169(EMBL-CDS)	CP002686(EMBL)
240255527(GI)	AT3G46960(Ensembl)
NP_190280(refSeq)	3.6.4.13(EC)
SKI2_ARATH(UniProtKB-ID)	Q9SD77(AltAccession)
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PANTHER Classification

PANTHER Family:	ATP-DEPENDENT RNA AND DNA HELICASE (PTHR12131)
PANTHER Subfamily:	DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH11 (PTHR12131:SF24)
PANTHER GO-slim Molecular Function:
PANTHER GO-slim Biological Process:	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
PANTHER GO-slim Cellular Component:	protein-containing complex cytoplasm
PANTHER protein class:	DNA metabolism protein

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	RNA helicase activity
GO BP Complete:	potassium ion transport, RNA fragment catabolic process, positive regulation of wax biosynthetic process, nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay, post-transcriptional gene silencing, response to potassium ion, RNA catabolic process
GO CC Complete:	nucleus, cytoplasm, Ski complex, plant-type vacuole

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=10898\|UniProtKB=Q15477	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000017997.5\|UniProtKB=K7CW25	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000002270.3\|UniProtKB=G3QIM4	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000000736.4\|UniProtKB=A0A1D5Q9D5	Macaca mulatta	O
MOUSE\|MGI=MGI=1099835\|UniProtKB=Q6NZR5	Mus musculus	O
RAT\|RGD=1303059\|UniProtKB=A0A0G2QC02	Rattus norvegicus	O
BOVIN\|Ensembl=ENSBTAG00000005587.6\|UniProtKB=E1BMS0	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000001424.5\|UniProtKB=F1RQW4	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000021823.4\|UniProtKB=A0A9L0RYH3	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000004519.6\|UniProtKB=M3W2C0	Felis catus	O
MONDO\|Ensembl=ENSMODG00000015052.4\|UniProtKB=F7FUK8	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000043811.1\|UniProtKB=A0A6I8PA15	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010025933.1\|UniProtKB=A0A8V0ZZI7	Gallus gallus	O
ANOCA\|Ensembl=ENSACAG00000011746.4\|UniProtKB=G1KLS9	Anolis carolinensis	O
XENLA\|Gene=skiv2l.L\|UniProtKB=A0A8J1LGY7	Xenopus laevis	O
XENTR\|Xenbase=XB-GENE-486233\|UniProtKB=F7CKF2	Xenopus tropicalis	O
ORYLA\|Ensembl=ENSORLG00000002021.2\|UniProtKB=H2L9I2	Oryzias latipes	O
DANRE\|ZFIN=ZDB-GENE-010430-5\|UniProtKB=F1R881	Danio rerio	O
CIOIN\|Ensembl=ENSCING00000005576.3\|UniProtKB=F6U4L6	Ciona intestinalis	O
BRAFL\|Gene=LOC118422040\|UniProtKB=A0A9J7LM45	Branchiostoma floridae	O
STRPU\|EnsemblGenome=LOC588833\|UniProtKB=A0A7M7PL75	Strongylocentrotus purpuratus	O
CAEEL\|WormBase=WBGene00008502\|UniProtKB=Q19103	Caenorhabditis elegans	O
CAEBR\|Gene_ORFName=CBG06018\|UniProtKB=A8X134	Caenorhabditis briggsae	O
PRIPA\|EnsemblGenome=WBGene00116685\|UniProtKB=A0A2A6CQQ5	Pristionchus pacificus	O
DROME\|FlyBase=FBgn0039117\|UniProtKB=Q9VCH8	Drosophila melanogaster	O
ANOGA\|EnsemblGenome=AGAP003182\|UniProtKB=Q7QBG5	Anopheles gambiae	O
TRICA\|EnsemblGenome=TC033645\|UniProtKB=A0A139WFJ1	Tribolium castaneum	O
DAPPU\|EnsemblGenome=DAPPUDRAFT_304359\|UniProtKB=E9GL10	Daphnia pulex	O
IXOSC\|EnsemblGenome=ISCW013335\|UniProtKB=B7QFE6	Ixodes scapularis	O
HELRO\|EnsemblGenome=HelroG193051\|UniProtKB=T1FUK6	helobdella robusta	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g210670\|UniProtKB=A7SDN7	Nematostella vectensis	O
TRIAD\|EnsemblGenome=TriadG21387\|UniProtKB=B3RPG2	Trichoplax adhaerens	O
MONBE\|EnsemblGenome=MONBRDRAFT_13948\|UniProtKB=A9UQ39	Monosiga brevicollis	O
YEAST\|SGD=S000004390\|UniProtKB=P35207	Saccharomyces cerevisiae	O
EREGS\|EnsemblGenome=AGOS_AER067C\|UniProtKB=Q757E6	Eremothecium gossypii	O
CANAL\|CGD=CAL0000185019\|UniProtKB=Q5A337	Candida albicans	O
YARLI\|EnsemblGenome=YALI0_A11869g\|UniProtKB=Q6CH67	Yarrowia lipolytica	O
YARLI\|EnsemblGenome=YALI0_A13519g\|UniProtKB=Q6CH23	Yarrowia lipolytica	O
EMENI\|EnsemblGenome=ANIA_06007\|UniProtKB=Q5B0C3	Emericella nidulans	O
ASPFU\|EnsemblGenome=AFUA_2G10000\|UniProtKB=Q4X1H0	Neosartorya fumigata	O
NEUCR\|EnsemblGenome=NCU01857\|UniProtKB=Q7SHE9	Neurospora crassa	O
SCLS1\|Gene_ORFName=SS1G_11456\|UniProtKB=A7F1I6	Sclerotinia sclerotiorum	O
PHANO\|EnsemblGenome=SNOG_08240\|UniProtKB=Q0UJ24	Phaeosphaeria nodorum	O
SCHPO\|PomBase=SPCC550.03c\|UniProtKB=O59801	Schizosaccharomyces pombe	O
SCHJY\|EnsemblGenome=SJAG_04118\|UniProtKB=B6K5Z2	Schizosaccharomyces japonicus	O
CRYNJ\|EnsemblGenome=CNI02710\|UniProtKB=Q5KBF6	Cryptococcus neoformans	O
USTMA\|EnsemblGenome=UMAG_00393\|UniProtKB=A0A0D1D0I7	Ustilago maydis	O
PUCGT\|EnsemblGenome=PGTG_07821\|UniProtKB=E3KB52	Puccinia graminis	O
BATDJ\|Gene_ORFName=BATDEDRAFT_9076\|UniProtKB=F4NVS6	Batrachochytrium dendrobatidis	O
ENTH1\|EnsemblGenome=CL6EHI_125170\|UniProtKB=C4M620	Entamoeba histolytica	O
DICDI\|dictyBase=DDB_G0277211\|UniProtKB=Q86K90	Dictyostelium discoideum	O
DICPU\|EnsemblGenome=DICPUDRAFT_152207\|UniProtKB=F0ZKR3	Dictyostelium purpureum	O
TRIV3\|Gene_ORFName=TVAG_140830\|UniProtKB=A2FEQ7	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_042000\|UniProtKB=A2EUT9	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_432490\|UniProtKB=A2DIP0	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_177450\|UniProtKB=A2FMN7	Trichomonas vaginalis	O
PLAF7\|EnsemblGenome=PF3D7_0909900\|UniProtKB=Q8I353	Plasmodium falciparum	O
PARTE\|EnsemblGenome=GSPATT00004797001\|UniProtKB=A0BIQ8	Paramecium tetraurelia	O
THAPS\|EnsemblGenome=THAPSDRAFT_31145\|UniProtKB=B8BS27	Thalassiosira pseudonana	O
PHYRM\|Gene=H3GLZ7_PHYRM\|UniProtKB=H3GLZ7	Phytophthora ramorum	O
CHLRE\|EnsemblGenome=CHLRE_11g482483v5\|UniProtKB=A0A2K3D8T8	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00029p00206820\|UniProtKB=W1PI76	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_7G01800\|UniProtKB=A0A0K9NNH0	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma09_g03720\|UniProtKB=A0A804KFN0	Musa acuminata subsp. malaccensis	LDO
SORBI\|EnsemblGenome=SORBI_3004G048800\|UniProtKB=A0A194YMR2	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb232660\|UniProtKB=A0A804PEX9	Zea mays	LDO
BRADI\|EnsemblGenome=BRADI_3g04550v3\|UniProtKB=I1HXF9	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.6HG0564930\|UniProtKB=A0A8I7BGL9	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS6B02G161800\|UniProtKB=A0A3B6PHG1	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6A02G133400\|UniProtKB=A0A3B6NMH3	Triticum aestivum	LDO
NELNU\|Gene_ORFName=HUJ06_028089\|UniProtKB=A0A1U7ZT07	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110792682\|UniProtKB=A0A9R0IPQ1	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr10g0436881\|UniProtKB=A0A251TK88	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C400183270\|UniProtKB=A0A9R1VU39	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a000291mg\|UniProtKB=A0A022S153	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_16208\|UniProtKB=A0A1U8GX39	Capsicum annuum	LDO
SOLLC\|EnsemblGenome=Solyc06g005990.3\|UniProtKB=A0A3Q7GRN6	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107804228\|UniProtKB=A0A1S4B3R1	Nicotiana tabacum	O
TOBAC\|Gene=LOC107829143\|UniProtKB=A0A1S4DFF4	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi06g00580\|UniProtKB=F6GUV1	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_B02279\|UniProtKB=A0A059D515	Eucalyptus grandis	LDO
BRACM\|EnsemblGenome=Bra018181\|UniProtKB=M4DNU3	Brassica campestris	LDO
GOSHI\|Gene=LOC107950212\|UniProtKB=A0A1U8NNE3	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_041685\|UniProtKB=A0A061GXA3	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g039491mg\|UniProtKB=A0A067FTK2	Citrus sinensis	LDO
POPTR\|Gene_ORFName=POPTR_009G041200\|UniProtKB=A0A3N7GA87	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_01G165300\|UniProtKB=A0A2C9WLC4	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0730930\|UniProtKB=B9S370	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_18G067400\|UniProtKB=I1N032	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_3g462290\|UniProtKB=A0A072UXI0	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr14_09780\|UniProtKB=A0A2I4FUW4	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_1G528500\|UniProtKB=A0A0A0LV33	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_6G062900\|UniProtKB=A0A251NL33	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_403447\|UniProtKB=D8QRF8	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_441420\|UniProtKB=D8RJE3	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c20_11040\|UniProtKB=A0A2K1IUW9	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0005s0056\|UniProtKB=A0A2R6XQS0	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_000240010\|UniProtKB=A0A1Y1HQ11	Klebsormidium nitens	LDO
CLOBH\|Gene_OrderedLocusName=CBO1365\|UniProtKB=A5I1J9	Clostridium botulinum	O
AQUAE\|EnsemblGenome=aq_1328\|UniProtKB=O67347	Aquifex aeolicus	O
THEYD\|EnsemblGenome=THEYE_A0439\|UniProtKB=B5YJ70	Thermodesulfovibrio yellowstonii	O
BRADU\|Gene=mgpS\|UniProtKB=Q89XZ6	Bradyrhizobium diazoefficiens	O
ECOLI\|EnsemblGenome=BAE76762\|UniProtKB=P52126	Escherichia coli	O