PANTHER Gene Information

Gene Symbol(s):

sof1

Organism:

Schizosaccharomyces pombe

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Gene Name:

Protein sof1

Gene ID:

SPBC1A4.07c

Protein ID:

O74340

Persistent Id:

PTN000523269

Alternate Ids:

DCA13(Synonym)	19112601(GI)
2540796(GeneID)	SPBC1A4.07c.1:pep(Ensembl_PRO)
CU329671(EMBL)	SPBC1A4.07c(Ensembl)
SPBC1A4.07c(Ensembl_TRS)	CAA20111(EMBL-CDS)
NM_001021712(refSeq)	sof1(Symbol)
DCA13_SCHPO(UniProtKB-ID)
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PANTHER Classification

PANTHER Family:	U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN (PTHR22851)
PANTHER Subfamily:	DDB1- AND CUL4-ASSOCIATED FACTOR 13 (PTHR22851:SF0)
PANTHER GO-slim Molecular Function:
PANTHER GO-slim Biological Process:	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
PANTHER GO-slim Cellular Component:	nucleolus small-subunit processome
PANTHER protein class:	RNA metabolism protein

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	snoRNA binding
GO BP Complete:	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO CC Complete:	nucleus, small-subunit processome, mitotic spindle, nucleolus

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Metabolism of RNA, Neddylation, Major pathway of rRNA processing in the nucleolus and cytosol, rRNA processing in the nucleus and cytosol, Metabolism of proteins, Post-translational protein modification, rRNA processing

Orthologs

ID	Organism	Type
HUMAN\|HGNC=24535\|UniProtKB=Q9NV06	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000020493.6\|UniProtKB=K7CPU2	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000015124.4\|UniProtKB=G3RGL6	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000019594.4\|UniProtKB=F7B9G5	Macaca mulatta	O
MACMU\|Ensembl=ENSMMUG00000019405.4\|UniProtKB=F6SV51	Macaca mulatta	LDO
MOUSE\|MGI=MGI=2684929\|UniProtKB=Q6PAC3	Mus musculus	LDO
RAT\|RGD=1308458\|UniProtKB=F1M7P1	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000021449.6\|UniProtKB=F1MVI8	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000006048.5\|UniProtKB=F1S1E1	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000009654.4\|UniProtKB=F6ZBF2	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000027256.4\|UniProtKB=M3WYT0	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845008632.1\|UniProtKB=A0A8I3N5L1	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000005549.4\|UniProtKB=F7FHD5	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000043698.1\|UniProtKB=A0A6I8NM83	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010012883.1\|UniProtKB=A0A452J811	Gallus gallus	LDO
CHICK\|Gene_ORFName=RCJMB04_5m12\|UniProtKB=Q5ZLK1	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000009465.4\|UniProtKB=G1KIY7	Anolis carolinensis	LDO
XENLA\|Gene=dcaf13.S\|UniProtKB=A0A1L8FTR7	Xenopus laevis	O
XENLA\|Gene=dcaf13.L\|UniProtKB=A0A1L8FZQ8	Xenopus laevis	O
XENLA\|Gene=dcaf13\|UniProtKB=Q7ZYQ6	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-5791289\|UniProtKB=Q6NVS5	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000002363.2\|UniProtKB=H2LAM3	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-040426-703\|UniProtKB=Q803X4	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000009498.1\|UniProtKB=W5MT93	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000005282.3\|UniProtKB=F6UHI7	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118404186\|UniProtKB=A0A9J7HGV0	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC589486\|UniProtKB=A0A7M7RGG6	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00022742\|UniProtKB=Q23494	Caenorhabditis elegans	LDO
CAEBR\|Gene_ORFName=CBG03683\|UniProtKB=A8WVL1	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00097722\|UniProtKB=A0A2A6BZ94	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0036500\|UniProtKB=Q9VUN7	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP010305\|UniProtKB=Q7Q2I8	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC000707\|UniProtKB=D6W8S8	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_308127\|UniProtKB=E9H698	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW000556\|UniProtKB=B7P621	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG63203\|UniProtKB=T1FXC2	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g234715\|UniProtKB=A7S0D5	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG50515\|UniProtKB=B3S158	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_19326\|UniProtKB=A9UQN9	Monosiga brevicollis	LDO
YEAST\|SGD=S000003934\|UniProtKB=P33750	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_AAL157C\|UniProtKB=Q75F99	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000196031\|UniProtKB=Q5A7Q9	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_D14080g\|UniProtKB=Q6C949	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_04226\|UniProtKB=C8V4A4	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_1G06290\|UniProtKB=Q4WJE2	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU01595\|UniProtKB=F5HCE4	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_05744\|UniProtKB=A7EK97	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_02569\|UniProtKB=Q0V095	Phaeosphaeria nodorum	LDO
SCHJY\|EnsemblGenome=SJAG_03569\|UniProtKB=B6K4K6	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CNA05930\|UniProtKB=Q5KNN0	Cryptococcus neoformans	O
PUCGT\|EnsemblGenome=PGTG_13498\|UniProtKB=E3KTK5	Puccinia graminis	O
CRYNJ\|EnsemblGenome=CNA05935\|UniProtKB=A0A0S2LI92	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_11689\|UniProtKB=A0A0D1E2Q7	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_18435\|UniProtKB=E3L609	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_84605\|UniProtKB=F4NT46	Batrachochytrium dendrobatidis	LDO
ENTH1\|EnsemblGenome=CL6EHI_085680\|UniProtKB=C4MAV3	Entamoeba histolytica	LDO
ENTH1\|EnsemblGenome=EHI_135930\|UniProtKB=C4MBB9	Entamoeba histolytica	LDO
ENTH1\|EnsemblGenome=EHI_083380\|UniProtKB=B1N423	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0276815\|UniProtKB=Q7KWL3	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_151786\|UniProtKB=F0ZJQ7	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_35_3880\|UniProtKB=E9AFL2	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb09.211.2550\|UniProtKB=Q38DQ1	Trypanosoma brucei	LDO
GIAIC\|EnsemblGenome=GL50803_8361\|UniProtKB=A8BRU6	Giardia intestinalis	LDO
TRIV3\|Gene_ORFName=TVAG_497110\|UniProtKB=A2EGV4	Trichomonas vaginalis	LDO
PLAF7\|EnsemblGenome=PF3D7_0409200\|UniProtKB=Q9U0J4	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00028647001\|UniProtKB=A0BGE5	Paramecium tetraurelia	LDO
THAPS\|EnsemblGenome=THAPSDRAFT_269352\|UniProtKB=B8C6X0	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3G8Z2_PHYRM\|UniProtKB=H3G8Z2	Phytophthora ramorum	LDO
PHYRM\|Gene=H3G5L4_PHYRM\|UniProtKB=H3G5L4	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_07g318702v5\|UniProtKB=A0A2K3DIV8	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00002p00202190\|UniProtKB=W1P0N3	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_33G00250\|UniProtKB=A0A0K9P7I3	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma08_g19420\|UniProtKB=A0A804K8E8	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_001410mg\|UniProtKB=K3XHN8	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3001G007800\|UniProtKB=C5WS04	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb064830\|UniProtKB=B4FXR9	Zea mays	O
SORBI\|EnsemblGenome=SORBI_3003G002700\|UniProtKB=C5XJI5	Sorghum bicolor	LDO
BRADI\|EnsemblGenome=BRADI_2g08280v3\|UniProtKB=A0A0Q3MGC0	Brachypodium distachyon	O
BRADI\|EnsemblGenome=BRADI_5g21640v3\|UniProtKB=I1J1S1	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.3HG0250210\|UniProtKB=F2DFF3	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS3B02G191500\|UniProtKB=W5CZ61	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS3D02G168100\|UniProtKB=A0A3B6GQT6	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS3A02G160900\|UniProtKB=A0A3B6EDI9	Triticum aestivum	LDO
NELNU\|Gene_ORFName=HUJ06_024260\|UniProtKB=A0A1U8A5Z1	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110782778\|UniProtKB=A0A9R0I4K9	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr05g0209251\|UniProtKB=A0A251UN69	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C400182730\|UniProtKB=A0A9R1W0F0	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a006293mg\|UniProtKB=A0A022S2R3	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_20220\|UniProtKB=A0A1U8HI17	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG401009395\|UniProtKB=M1AJV3	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc07g053660.3\|UniProtKB=A0A3Q7HEM9	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107809218\|UniProtKB=A0A1S4BKD9	Nicotiana tabacum	O
TOBAC\|Gene=LOC107820775\|UniProtKB=A0A1S4CNI4	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi12g00264\|UniProtKB=E0CTI3	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_K01052\|UniProtKB=A0A059A0D2	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=DARMORV10_A03P58100.1\|UniProtKB=A0A078GWJ4	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra024202\|UniProtKB=M4E5Z8	Brassica campestris	LDO
ARATH\|TAIR=locus=2121328\|UniProtKB=Q93VK1	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107886796\|UniProtKB=A0A1U8HQW8	Gossypium hirsutum	O
GOSHI\|Gene=LOC107909268\|UniProtKB=A0A1U8JTX9	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_008186\|UniProtKB=A0A061E573	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g012994mg\|UniProtKB=A0A067DNC0	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_007G137300v3\|UniProtKB=A0A2K1ZU10	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_017G014700v3\|UniProtKB=U5FHE1	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_13G142500\|UniProtKB=A0A2C9URQ4	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_1172980\|UniProtKB=B9RVU4	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_14G065100\|UniProtKB=A0A0R0GAJ3	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_11G207100\|UniProtKB=A0A0R0HK59	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_02G251700\|UniProtKB=I1JI32	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_1g022960\|UniProtKB=G7I5C2	Medicago truncatula	LDO
JUGRE\|Gene=LOC109001450\|UniProtKB=A0A2I4FRJ7	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_7G038680\|UniProtKB=A0A0A0K1Y9	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_1G573700\|UniProtKB=A0A251RK77	Prunus persica	LDO
PRUPE\|EnsemblGenome=PRUPE_6G177000\|UniProtKB=M5WAV1	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_116315\|UniProtKB=D8R5Z0	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c9_6000\|UniProtKB=A9TY87	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0143s0027\|UniProtKB=A0A2R6W662	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_002520070\|UniProtKB=A0A1Y1ICE7	Klebsormidium nitens	LDO