PANTHER Gene Information

Gene Symbol(s):

mtr-4

Organism:

Caenorhabditis elegans

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Gene Name:

mRNA transport homolog 4

Gene ID:

WBGene00012342

Protein ID:

Q23223

Persistent Id:

PTN002281588

Alternate Ids:

2495152(GI)	W08D2.7(Ensembl_TRS)
NP_501757(refSeq)	WBGene00012342(Ensembl)
3.6.4.-(EC)	MTR4_CAEEL(UniProtKB-ID)
Z70271(EMBL)	CAA94235(EMBL-CDS)
MTR4(Synonym)	mtr-4(Symbol)
W08D2(WormBase_TRS)	W08D2.7(Ensembl_PRO)
WBGene00012342(WormBase)	CE06562(WormBase_PRO)
177824(GeneID)
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PANTHER Classification

PANTHER Family:	ATP-DEPENDENT RNA AND DNA HELICASE (PTHR12131)
PANTHER Subfamily:	EXOSOME RNA HELICASE MTR4 (PTHR12131:SF7)
PANTHER GO-slim Molecular Function:
PANTHER GO-slim Biological Process:	maturation of 5.8S rRNA
PANTHER GO-slim Cellular Component:	nucleus
PANTHER protein class:	DNA metabolism protein

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	nucleic acid binding, ATP binding, RNA binding, RNA helicase activity, helicase activity, hydrolase activity
GO BP Complete:	maturation of 5.8S rRNA, RNA catabolic process
GO CC Complete:	nucleus, TRAMP complex

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

mRNA Splicing - Major Pathway, mRNA Splicing, Metabolism of RNA, Processing of Capped Intron-Containing Pre-mRNA, Major pathway of rRNA processing in the nucleolus and cytosol, rRNA processing, rRNA processing in the nucleus and cytosol

Orthologs

ID	Organism	Type
HUMAN\|HGNC=18734\|UniProtKB=P42285	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000016878.5\|UniProtKB=H2QQX1	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000001867.3\|UniProtKB=A0A2I2YMS9	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000010379.4\|UniProtKB=F7D9W7	Macaca mulatta	LDO
MOUSE\|MGI=MGI=1919448\|UniProtKB=Q9CZU3	Mus musculus	LDO
RAT\|RGD=1305984\|UniProtKB=A0A8I5ZN47	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000010518.6\|UniProtKB=A6H714	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000016911.4\|UniProtKB=F1SLL6	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000023723.4\|UniProtKB=A0A9L0R1K3	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000010575.6\|UniProtKB=M3WDJ1	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845027076.1\|UniProtKB=A0A8I3S665	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000019494.4\|UniProtKB=F6VUX5	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000004885.2\|UniProtKB=A0A6I8NTX7	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010014041.1\|UniProtKB=A0A8V0YUC5	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000015200.4\|UniProtKB=G1KQY4	Anolis carolinensis	LDO
XENLA\|Gene=mtrex.S\|UniProtKB=A0A1L8HRK6	Xenopus laevis	O
XENLA\|Gene=mtrex.L\|UniProtKB=A0A1L8I2M5	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-1013876\|UniProtKB=A0A6I8Q447	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000005443.2\|UniProtKB=H2LLE2	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-040426-2854\|UniProtKB=Q6P7X6	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000010186.1\|UniProtKB=W5MVR2	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000003239.4\|UniProtKB=F6Z5U4	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118431630\|UniProtKB=A0A9J7ND06	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC762385\|UniProtKB=A0A7M7PIV5	Strongylocentrotus purpuratus	LDO
CAEBR\|WormBase=WBGene00026335\|UniProtKB=A8WV55	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00099643\|UniProtKB=A0A2A6B3M6	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0001986\|UniProtKB=Q9Y134	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP009600\|UniProtKB=Q7Q1W4	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC010559\|UniProtKB=D6WE72	Tribolium castaneum	LDO
HELRO\|EnsemblGenome=HelroG96072\|UniProtKB=T1G9A1	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g234599\|UniProtKB=A7RX65	Nematostella vectensis	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_35219\|UniProtKB=A9V4P7	Monosiga brevicollis	LDO
YEAST\|SGD=S000003586\|UniProtKB=P47047	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_AEL181C\|UniProtKB=Q758E3	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000198236\|UniProtKB=A0A1D8PRD5	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_D12210g\|UniProtKB=Q6C9C9	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_04412\|UniProtKB=Q5B4W8	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_4G07160\|UniProtKB=Q4WNW2	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU03363\|UniProtKB=Q1K502	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_03952\|UniProtKB=A7EF61	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_05249\|UniProtKB=Q0USL5	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPAC17H9.02\|UniProtKB=O13799	Schizosaccharomyces pombe	O
SCHJY\|EnsemblGenome=SJAG_02382\|UniProtKB=B6K2B4	Schizosaccharomyces japonicus	O
SCHPO\|PomBase=SPAC6F12.16c\|UniProtKB=O14232	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_16455\|UniProtKB=T0S321	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CND05090\|UniProtKB=Q5KHW3	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_11667\|UniProtKB=A0A0D1CV54	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_11325\|UniProtKB=E3KLI1	Puccinia graminis	LDO
PUCGT\|EnsemblGenome=PGTG_19883\|UniProtKB=E3LBM8	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_20298\|UniProtKB=F4P7N4	Batrachochytrium dendrobatidis	LDO
ENTH1\|EnsemblGenome=CL6EHI_134610\|UniProtKB=C4M010	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0275633\|UniProtKB=Q86IE2	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_53548\|UniProtKB=F0ZDF1	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_36_3000\|UniProtKB=Q4Q1B9	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb10.6k15.3220\|UniProtKB=Q38AL9	Trypanosoma brucei	LDO
GIAIC\|EnsemblGenome=GL50803_11384\|UniProtKB=A8BH12	Giardia intestinalis	O
GIAIC\|EnsemblGenome=GL50803_17146\|UniProtKB=A8B488	Giardia intestinalis	LDO
TRIV3\|Gene_ORFName=TVAG_430770\|UniProtKB=A2E3A0	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_411940\|UniProtKB=A2FBA2	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_309850\|UniProtKB=A2G2R0	Trichomonas vaginalis	LDO
PLAF7\|EnsemblGenome=PF3D7_1331100\|UniProtKB=C0H5F0	Plasmodium falciparum	O
PLAF7\|EnsemblGenome=PF3D7_0602100\|UniProtKB=C6KSM1	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00016170001\|UniProtKB=A0DE61	Paramecium tetraurelia	LDO
CHLRE\|EnsemblGenome=CHLRE_06g289950v5\|UniProtKB=A0A2K3DQ74	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00025p00200390\|UniProtKB=W1PYG0	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_144G00230\|UniProtKB=A0A0K9PZL4	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma03_g05360\|UniProtKB=A0A804I8P9	Musa acuminata subsp. malaccensis	LDO
MAIZE\|EnsemblGenome=Zm00001eb337140\|UniProtKB=A0A1D6FFE4	Zea mays	LDO
NELNU\|Gene_ORFName=HUJ06_013086\|UniProtKB=A0A1U7ZEU2	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110783960\|UniProtKB=A0A9R0I7M3	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr10g0455721\|UniProtKB=A0A251TQX8	Helianthus annuus	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr12g0526491\|UniProtKB=A0A251T005	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C500257870\|UniProtKB=A0A9R1VHT8	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a000746mg\|UniProtKB=A0A022QEQ0	Erythranthe guttata	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400020389\|UniProtKB=M1BTK7	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc12g017860.2\|UniProtKB=A0A3Q7J6P0	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107801795\|UniProtKB=A0A1S4AVP1	Nicotiana tabacum	O
TOBAC\|Gene=LOC107812229\|UniProtKB=A0A1S4BV58	Nicotiana tabacum	LDO
CAPAN\|EnsemblGenome=T459_14872\|UniProtKB=A0A1U8GYD6	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400013698\|UniProtKB=M1B2J7	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc05g047520.3\|UniProtKB=A0A3Q7GMJ5	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107781853\|UniProtKB=A0A1S3Z107	Nicotiana tabacum	LDO
TOBAC\|Gene=LOC107799000\|UniProtKB=A0A1S4ALQ0	Nicotiana tabacum	O
VITVI\|EnsemblGenome=Vitvi11g00923\|UniProtKB=F6H9P7	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_C00066\|UniProtKB=A0A059CJH4	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=DARMORV10_C05P58420.1\|UniProtKB=A0A078HXY9	Brassica napus	O
BRANA\|Gene_ORFName=DARMORV10_A05P39390.1\|UniProtKB=A0A078I5G9	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra029783\|UniProtKB=M4ELW3	Brassica campestris	LDO
ARATH\|TAIR=locus=2063648\|UniProtKB=Q9ZVW2	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107893491\|UniProtKB=A0A1U8I730	Gossypium hirsutum	O
GOSHI\|Gene=LOC107888367\|UniProtKB=A0A1U8HPG8	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_039723\|UniProtKB=A0A061GYG9	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g0021841mg\|UniProtKB=A0A067EIW0	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_006G078000v3\|UniProtKB=A0A2K1ZYL8	Populus trichocarpa	LDO
POPTR\|Gene_ORFName=POPTR_018G146001\|UniProtKB=A0A3N7GAA6	Populus trichocarpa	O
MANES\|EnsemblGenome=MANES_18G138900\|UniProtKB=A0A2C9U3J8	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0645430\|UniProtKB=B9SZG8	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_05G221200\|UniProtKB=A0A0R0K5X3	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_08G027700\|UniProtKB=I1KPQ5	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_5g069360\|UniProtKB=G7KE11	Medicago truncatula	O
MEDTR\|EnsemblGenome=MTR_8g101340\|UniProtKB=G7LIV7	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr06_17590\|UniProtKB=A0A2I4ELM4	Juglans regia	LDO
PRUPE\|EnsemblGenome=PRUPE_1G065000\|UniProtKB=A0A251QWD2	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_268485\|UniProtKB=D8QXC9	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c10_7310\|UniProtKB=A9S993	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0044s0084\|UniProtKB=A0A2R6X0K6	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_001600200\|UniProtKB=A0A1Y1HYL8	Klebsormidium nitens	LDO
THAPS\|EnsemblGenome=THAPSDRAFT_34661\|UniProtKB=B8C5Z9	Thalassiosira pseudonana	O
PHYRM\|Gene=H3GEP5_PHYRM\|UniProtKB=H3GEP5	Phytophthora ramorum	O
PHYRM\|Gene=H3H7Q1_PHYRM\|UniProtKB=H3H7Q1	Phytophthora ramorum	O
CHLRE\|EnsemblGenome=CHLRE_02g117900v5\|UniProtKB=A0A2K3E3F4	Chlamydomonas reinhardtii	O
AMBTC\|EnsemblGenome=AMTR_s00066p00125980\|UniProtKB=U5DI10	Amborella trichopoda	O
ZOSMR\|Gene_ORFName=ZOSMA_24G01530\|UniProtKB=A0A0K9PGQ7	Zostera marina	O
MUSAM\|EnsemblGenome=Ma02_g19590\|UniProtKB=A0A804I4L0	Musa acuminata subsp. malaccensis	O
SORBI\|EnsemblGenome=SORBI_3010G003400\|UniProtKB=C5Z244	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb379350\|UniProtKB=K7W7N9	Zea mays	O
BRADI\|EnsemblGenome=BRADI_1g52230v3\|UniProtKB=I1H222	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.7HG0635400\|UniProtKB=A0A8I6YFW6	Hordeum vulgare subsp. vulgare	O
NELNU\|Gene=LOC104610841\|UniProtKB=A0A1U8B4W3	Nelumbo nucifera	O
SPIOL\|Gene=LOC110803579\|UniProtKB=A0A9R0JD74	Spinacia oleracea	O
HELAN\|EnsemblGenome=HanXRQr2_Chr10g0441621\|UniProtKB=A0A251TNV3	Helianthus annuus	O
LACSA\|Gene_ORFName=LSAT_V11C500265960\|UniProtKB=A0A9R1VFA1	Lactuca sativa	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a000749mg\|UniProtKB=A0A022R112	Erythranthe guttata	O
CAPAN\|EnsemblGenome=T459_32500\|UniProtKB=A0A2G2Y1R4	Capsicum annuum	O
SOLTU\|EnsemblGenome=PGSC0003DMG400020706\|UniProtKB=M1BUV6	Solanum tuberosum	O
SOLLC\|EnsemblGenome=Solyc01g103080.3\|UniProtKB=A0A3Q7F9S1	Solanum lycopersicum	O
TOBAC\|Gene=LOC107800695\|UniProtKB=A0A1S4ARU4	Nicotiana tabacum	O
TOBAC\|Gene=LOC107766793\|UniProtKB=A0A1S3XMH8	Nicotiana tabacum	O
TOBAC\|Gene=LOC107830836\|UniProtKB=A0A1S4DKT1	Nicotiana tabacum	O
VITVI\|Gene_OrderedLocusName=VIT_06s0009g01750\|UniProtKB=F6H9Z0	Vitis vinifera	O
EUCGR\|EnsemblGenome=EUGRSUZ_G00079\|UniProtKB=A0A059B8N0	Eucalyptus grandis	O
BRANA\|Gene_ORFName=DARMORV10_A01P28790.1\|UniProtKB=A0A078JEE8	Brassica napus	O
BRANA\|Gene_ORFName=GSBRNA2T00046433001\|UniProtKB=A0A078H226	Brassica napus	O
BRACM\|EnsemblGenome=Bra027835\|UniProtKB=M4EGC1	Brassica campestris	O
ARATH\|TAIR=locus=2026001\|UniProtKB=Q9XIF2	Arabidopsis thaliana	O
GOSHI\|Gene=LOC107899861\|UniProtKB=A0A1U8IXI8	Gossypium hirsutum	O
GOSHI\|Gene=LOC107961953\|UniProtKB=A0A1U8PR60	Gossypium hirsutum	O
THECC\|EnsemblGenome=TCM_027106\|UniProtKB=A0A061G9B8	Theobroma cacao	O
POPTR\|Gene_ORFName=POPTR_004G228700\|UniProtKB=A0A3N7G778	Populus trichocarpa	O
MANES\|EnsemblGenome=MANES_07G030200\|UniProtKB=A0A251KGL0	Manihot esculenta	O
RICCO\|Gene_ORFName=RCOM_0496650\|UniProtKB=B9SPB9	Ricinus communis	O
SOYBN\|EnsemblGenome=GLYMA_08G361900\|UniProtKB=I1KZI0	Glycine max	O
MEDTR\|EnsemblGenome=MTR_7g080730\|UniProtKB=G7KSG0	Medicago truncatula	O
JUGRE\|Gene=LOC109007032\|UniProtKB=A0A6P9DXD2	Juglans regia	O
CUCSA\|EnsemblGenome=Csa_6G109760\|UniProtKB=A0A0A0KFR7	Cucumis sativus	O
PRUPE\|EnsemblGenome=PRUPE_6G113400\|UniProtKB=A0A251NNR1	Prunus persica	O
SELML\|EnsemblGenome=SELMODRAFT_107227\|UniProtKB=D8S1Z0	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_174598\|UniProtKB=D8RV89	Selaginella moellendorffii	O
PHYPA\|EnsemblGenome=Pp3c14_23340\|UniProtKB=A0A2K1JIZ4	Physcomitrella patens	O
MARPO\|EnsemblGenome=MARPO_0097s0084\|UniProtKB=A0A2R6WFK3	Marchantia polymorpha	O
KLENI\|Gene_ORFName=KFL_002640180\|UniProtKB=A0A0U9HKI9	Klebsormidium nitens	O
CLOBH\|Gene_OrderedLocusName=CBO1365\|UniProtKB=A5I1J9	Clostridium botulinum	O
AQUAE\|EnsemblGenome=aq_1328\|UniProtKB=O67347	Aquifex aeolicus	O
THEYD\|EnsemblGenome=THEYE_A0439\|UniProtKB=B5YJ70	Thermodesulfovibrio yellowstonii	O
BRADU\|Gene=mgpS\|UniProtKB=Q89XZ6	Bradyrhizobium diazoefficiens	O
ECOLI\|EnsemblGenome=BAE76762\|UniProtKB=P52126	Escherichia coli	O