PANTHER Gene Information

Gene Symbol(s):

AMTR_s00099p00102890

Organism:

Amborella trichopoda

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Gene Name:

C3H1-type domain-containing protein

Gene ID:

AMTR_s00099p00102890

Protein ID:

W1NYH5

Persistent Id:

PTN004373752

Alternate Ids:

W1NYH5_AMBTC(UniProtKB-ID)	AMTR_s00099p00102890(Ensembl)
ERM99729(EMBL-CDS)	W1NYH5(Synonym)
548839440(GI)	KI394994(EMBL)
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PANTHER Classification

PANTHER Family:	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT (PTHR12620)
PANTHER Subfamily:	ZINC FINGER (CCCH TYPE), RNA-BINDING MOTIF AND SERINE_ARGININE RICH 2 (PTHR12620:SF4)
PANTHER GO-slim Molecular Function:	pre-mRNA binding
PANTHER GO-slim Biological Process:	mRNA splicing, via spliceosome
PANTHER GO-slim Cellular Component:	spliceosomal complex
PANTHER protein class:	RNA splicing factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	RNA binding, pre-mRNA 3'-splice site binding, metal ion binding
GO BP Complete:	mRNA splicing, via spliceosome
GO CC Complete:	U2AF complex, spliceosomal complex

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=12456\|UniProtKB=Q15695	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000017138.4\|UniProtKB=H2QRB8	Pan troglodytes	O
HUMAN\|HGNC=23019\|UniProtKB=Q15696	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000045685.1\|UniProtKB=A0A2I3RQ99	Pan troglodytes	O
PANTR\|Ensembl=ENSPTRG00000021693.7\|UniProtKB=H2R2N6	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000025707.2\|UniProtKB=A0A2I2ZRQ9	Gorilla gorilla gorilla	O
GORGO\|Ensembl=ENSGGOG00000011962.3\|UniProtKB=G3S5P5	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000042951.2\|UniProtKB=A0A5F7ZBP1	Macaca mulatta	O
MACMU\|Ensembl=ENSMMUG00000058131.1\|UniProtKB=A0A5F7ZCH0	Macaca mulatta	LDO
MOUSE\|MGI=MGI=98885\|UniProtKB=Q64707	Mus musculus	O
RAT\|RGD=1561824\|UniProtKB=Q5RK33	Rattus norvegicus	O
MOUSE\|MGI=MGI=103287\|UniProtKB=Q62377	Mus musculus	LDO
RAT\|RGD=1559763\|UniProtKB=D3ZHQ8	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000020419.6\|UniProtKB=F1N5D0	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000030283.5\|UniProtKB=I3LF64	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000006454.4\|UniProtKB=A0A9L0SCU9	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000025255.4\|UniProtKB=M3X390	Felis catus	O
FELCA\|Ensembl=ENSFCAG00000031216.4\|UniProtKB=M3WB87	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845023968.1\|UniProtKB=A0A8I3PG39	Canis lupus familiaris	O
CANLF\|Ensembl=ENSCAFG00845030767.1\|UniProtKB=A0A8I3QBM7	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000017202.4\|UniProtKB=F6XEZ3	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000042683.1\|UniProtKB=A0A6I8N672	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010001513.1\|UniProtKB=V9GWB4	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000017034.4\|UniProtKB=G1KTG0	Anolis carolinensis	LDO
XENLA\|Gene=LOC108707924\|UniProtKB=A0A1L8HCX8	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-991302\|UniProtKB=A0A6I8Q3E7	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000003476.2\|UniProtKB=H2LEF3	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-030131-1495\|UniProtKB=A0A8M1QHE8	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000007427.1\|UniProtKB=W5MKV1	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000022974.1\|UniProtKB=H2XN33	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118427330\|UniProtKB=A0A9J7N7J4	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC583099\|UniProtKB=A0A7M7LVW0	Strongylocentrotus purpuratus	LDO
DROME\|FlyBase=FBgn0031628\|UniProtKB=Q9VR26	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP010194\|UniProtKB=A0A1S4H473	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC010403\|UniProtKB=D6WKS3	Tribolium castaneum	LDO
IXOSC\|EnsemblGenome=ISCW019452\|UniProtKB=B7PRT8	Ixodes scapularis	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g243947\|UniProtKB=A7SAD9	Nematostella vectensis	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g209221\|UniProtKB=A7SAD7	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG55208\|UniProtKB=B3RU99	Trichoplax adhaerens	LDO
TRIV3\|Gene_ORFName=TVAG_302130\|UniProtKB=A2EGN8	Trichomonas vaginalis	LDO
ZOSMR\|Gene_ORFName=ZOSMA_25G00060\|UniProtKB=A0A0K9PF01	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma06_g14230\|UniProtKB=A0A804JG42	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_016530mg\|UniProtKB=K3YQI7	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3004G178300\|UniProtKB=A0A1Z5RN03	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb243910\|UniProtKB=F5CEP4	Zea mays	LDO
ORYSJ\|Gene_OrderedLocusName=LOC_Os02g35150\|UniProtKB=Q6YVX9	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_3g45900v3\|UniProtKB=A0A2K2D3J2	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.5HG0516530\|UniProtKB=A0A8I6Y2J8	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS5D02G431900\|UniProtKB=A0A3B6MZG1	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS5A02G423300\|UniProtKB=A0A3B6KNW1	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS5B02G425300\|UniProtKB=A0A3B6LT29	Triticum aestivum	LDO
NELNU\|Gene_ORFName=HUJ06_013222\|UniProtKB=A0A1U8Q270	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110779120\|UniProtKB=A0A9R0JM58	Spinacia oleracea	LDO
HELAN\|Gene_ORFName=HanXRQr2_Chr03g0101621\|UniProtKB=A0A9K3NUF5	Helianthus annuus	LDO
HELAN\|Gene_ORFName=HannXRQ_Chr12g0381671\|UniProtKB=A0A251T899	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C900505220\|UniProtKB=A0A9R1UH07	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a023096mg\|UniProtKB=A0A022R484	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_32499\|UniProtKB=A0A2G2Y1P4	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400020705\|UniProtKB=M1BUV1	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc01g103090.3\|UniProtKB=A0A3Q7ER80	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107830837\|UniProtKB=A0A1S4DKS9	Nicotiana tabacum	O
TOBAC\|Gene=LOC107815844\|UniProtKB=A0A1S4C752	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi12g02121\|UniProtKB=F6HK03	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_G00321\|UniProtKB=A0A059B928	Eucalyptus grandis	O
EUCGR\|EnsemblGenome=EUGRSUZ_G00080\|UniProtKB=A0A059B8Y9	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=DARMORV10_C05P08480.1\|UniProtKB=A0A078HMC7	Brassica napus	O
BRANA\|Gene_ORFName=GSBRNA2T00012823001\|UniProtKB=A0A078G6P9	Brassica napus	LDO
BRANA\|Gene_ORFName=GSBRNA2T00015087001\|UniProtKB=A0A078G7F0	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra018446\|UniProtKB=M4DPK5	Brassica campestris	LDO
ARATH\|TAIR=locus=2012843\|UniProtKB=Q9SY74	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107920000\|UniProtKB=A0A1U8KR69	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107910661\|UniProtKB=A0A1U8JZC4	Gossypium hirsutum	O
GOSHI\|Gene=LOC107893935\|UniProtKB=A0A1U8IFE3	Gossypium hirsutum	O
THECC\|EnsemblGenome=TCM_027104\|UniProtKB=A0A061G7B2	Theobroma cacao	LDO
POPTR\|Gene_ORFName=POPTR_004G228600\|UniProtKB=A0A3N7EV75	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_10G111800\|UniProtKB=A0A2C9V6U4	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0496850\|UniProtKB=B9SPC8	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_08G162800\|UniProtKB=A0A0R0ITE7	Glycine max	LDO
SOYBN\|EnsemblGenome=GLYMA_15G244700\|UniProtKB=K7MDM8	Glycine max	O
MEDTR\|EnsemblGenome=MTR_2g005450\|UniProtKB=G7IN58	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr13_00210\|UniProtKB=A0A2I4EEM4	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_3G111250\|UniProtKB=A0A0A0L5G3	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_1G585000\|UniProtKB=A0A251RK36	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_77053\|UniProtKB=D8QRX9	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_94627\|UniProtKB=D8RIW8	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c3_25240\|UniProtKB=A0A2K1KVZ7	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0079s0042\|UniProtKB=A0A2R6WKZ7	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_004120160\|UniProtKB=A0A1Y1IFJ6	Klebsormidium nitens	LDO