PANTHER Gene Information

Gene Symbol(s):

AMTR_s00138p00042200

Organism:

Amborella trichopoda

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Gene Name:

RRM domain-containing protein

Gene ID:

AMTR_s00138p00042200

Protein ID:

W1NDP3

Persistent Id:

PTN005258551

Alternate Ids:

586643024(GI)	AMTR_s00138p00042200(Ensembl)
W1NDP3(Synonym)	W1NDP3_AMBTC(UniProtKB-ID)
KI397561(EMBL)	XP_006826585(refSeq)
18421716(GeneID)	ERM93822(EMBL-CDS)
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PANTHER Classification

PANTHER Family:	RNA-BINDING PROTEIN 8A (PTHR45894)
PANTHER Subfamily:	RNA-BINDING PROTEIN 8A (PTHR45894:SF1)
PANTHER GO-slim Molecular Function:	mRNA binding
PANTHER GO-slim Biological Process:	RNA splicing
PANTHER GO-slim Cellular Component:	nuclear protein-containing complex
PANTHER protein class:

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	RNA binding, mRNA binding
GO BP Complete:	RNA splicing, positive regulation of gene expression, RNA processing
GO CC Complete:	nucleus, exon-exon junction complex, cytoplasm

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=9905\|UniProtKB=Q9Y5S9	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000001201.7\|UniProtKB=H2PZT9	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000037248.1\|UniProtKB=A0A2I2ZK34	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000016051.3\|UniProtKB=H9ZG30	Macaca mulatta	LDO
MOUSE\|MGI=MGI=3612447\|UniProtKB=A0A0N4SUH6	Mus musculus	O
MOUSE\|MGI=MGI=1913129\|UniProtKB=Q9CWZ3	Mus musculus	LDO
RAT\|RGD=1310099\|UniProtKB=Q27W01	Rattus norvegicus	LDO
BOVIN\|Gene=RBM8A\|UniProtKB=Q3ZCE8	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000028509.4\|UniProtKB=I3LI59	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000022024.3\|UniProtKB=F6XEW8	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000033936.3\|UniProtKB=A0A2I2V431	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845011260.1\|UniProtKB=A0A8I3NI72	Canis lupus familiaris	LDO
CANLF\|Ensembl=ENSCAFG00845011260.1\|UniProtKB=A0A8I3NI72	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000047652.1\|UniProtKB=A0A5F8HHR3	Monodelphis domestica	LDO
XENLA\|Gene=rbm8a-a\|UniProtKB=Q9DF42	Xenopus laevis	O
XENLA\|Gene=rbm8a-b\|UniProtKB=Q6PH90	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-6250837\|UniProtKB=Q28BZ1	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000016263.2\|UniProtKB=H2MNQ3	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-050306-51\|UniProtKB=Q5D018	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000009082.1\|UniProtKB=W5MRR2	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000004877.3\|UniProtKB=A0A1W5BDS1	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118427605\|UniProtKB=A0A9J7N7V5	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC115920634\|UniProtKB=A0A7M7NAJ2	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00004387\|UniProtKB=Q21832	Caenorhabditis elegans	LDO
CAEBR\|WormBase=WBGene00037565\|UniProtKB=A8XSZ2	Caenorhabditis briggsae	LDO
DROME\|FlyBase=FBgn0033378\|UniProtKB=Q9V535	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP006365\|UniProtKB=Q7Q5L6	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC005086\|UniProtKB=D2CG02	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_347007\|UniProtKB=E9GGD3	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW016642\|UniProtKB=B7P8N1	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG166240\|UniProtKB=T1EXX7	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG70687\|UniProtKB=T1G0A7	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g91495\|UniProtKB=A7RS89	Nematostella vectensis	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g56293\|UniProtKB=A7T1M0	Nematostella vectensis	O
TRIAD\|EnsemblGenome=TriadG63736\|UniProtKB=B3RRM4	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_27383\|UniProtKB=A9V546	Monosiga brevicollis	LDO
YARLI\|EnsemblGenome=YALI0_E02530g\|UniProtKB=Q6C7A0	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_04505\|UniProtKB=Q5B4M5	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_2G03260\|UniProtKB=Q4WI32	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU03226\|UniProtKB=Q7SGU3	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_12129\|UniProtKB=A7F2I2	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_00429\|UniProtKB=Q0V6D5	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPAC23A1.09\|UniProtKB=O42847	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_01852\|UniProtKB=B6JZ29	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CNC05100\|UniProtKB=Q5KJW8	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_10902\|UniProtKB=A0A0D1DY57	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_02815\|UniProtKB=E3JWE9	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_13131\|UniProtKB=F4P843	Batrachochytrium dendrobatidis	LDO
DICDI\|dictyBase=DDB_G0286007\|UniProtKB=Q54ME8	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_40410\|UniProtKB=F0ZY58	Dictyostelium purpureum	LDO
PLAF7\|EnsemblGenome=PF3D7_1406000\|UniProtKB=Q8IM34	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00001994001\|UniProtKB=A0D7D5	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00027102001\|UniProtKB=A0EHI7	Paramecium tetraurelia	LDO
PARTE\|EnsemblGenome=GSPATT00017571001\|UniProtKB=A0DJL0	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00005114001\|UniProtKB=A0BP98	Paramecium tetraurelia	LDO
THAPS\|EnsemblGenome=THAPSDRAFT_18841\|UniProtKB=B8C1B0	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3G9L3_PHYRM\|UniProtKB=H3G9L3	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_12g526750v5\|UniProtKB=A8J5G1	Chlamydomonas reinhardtii	LDO
MUSAM\|EnsemblGenome=Ma05_g24060\|UniProtKB=A0A804J7Y1	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma06_g25050\|UniProtKB=A0A804JK55	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma06_g09920\|UniProtKB=A0A804JEL1	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_037569mg\|UniProtKB=K4AFB2	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3001G043500\|UniProtKB=A0A1Z5S4A2	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb062000\|UniProtKB=B6TMU5	Zea mays	O
ORYSJ\|EnsemblGenome=Os03g0809900\|UniProtKB=Q6ATR0	Oryza sativa	O
BRADI\|EnsemblGenome=BRADI_1g04561v3\|UniProtKB=I1GLV0	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.5HG0523030\|UniProtKB=A0A8I6XU25	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS5D02G471200\|UniProtKB=A0A3B6N0P9	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS5B02G469700\|UniProtKB=A0A3B6LVU1	Triticum aestivum	O
SETIT\|EnsemblGenome=SETIT_023278mg\|UniProtKB=K3Z9Q7	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3009G036900\|UniProtKB=C5YZM3	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb354470\|UniProtKB=B6TN68	Zea mays	O
MAIZE\|EnsemblGenome=Zm00001eb417640\|UniProtKB=B6SLI2	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os05g0140500\|UniProtKB=B7FAL5	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_2g36710v3\|UniProtKB=A0A2K2DC68	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.1HG0018730\|UniProtKB=A0A8I7B2H8	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS1B02G100800\|UniProtKB=W5AKQ3	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS1A02G083400\|UniProtKB=A0A3B5XVN7	Triticum aestivum	LDO
SETIT\|EnsemblGenome=SETIT_020670mg\|UniProtKB=K3Z2A2	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3003G165101\|UniProtKB=A0A1W0VXM8	Sorghum bicolor	O
BRADI\|EnsemblGenome=BRADI_2g13390v3\|UniProtKB=I1HFH3	Brachypodium distachyon	O
NELNU\|Gene_ORFName=HUJ06_031075\|UniProtKB=A0A1U8API2	Nelumbo nucifera	O
NELNU\|Gene=LOC104613424\|UniProtKB=A0A1U8BDL6	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110801134\|UniProtKB=A0A9R0K906	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr11g0516811\|UniProtKB=A0A251TEK4	Helianthus annuus	O
HELAN\|EnsemblGenome=HanXRQr2_Chr01g0042681\|UniProtKB=A0A251VUE3	Helianthus annuus	LDO
HELAN\|Gene_ORFName=HannXRQ_Chr13g0401231\|UniProtKB=A0A251SR88	Helianthus annuus	O
LACSA\|Gene_ORFName=LSAT_V11C100019980\|UniProtKB=A0A9R1WFN4	Lactuca sativa	O
LACSA\|Gene_ORFName=LSAT_V11C700366970\|UniProtKB=A0A9R1X461	Lactuca sativa	O
LACSA\|Gene_ORFName=LSAT_V11C500246150\|UniProtKB=A0A9R1XDV9	Lactuca sativa	O
LACSA\|Gene_ORFName=LSAT_V11C700374020\|UniProtKB=A0A9R1X344	Lactuca sativa	O
LACSA\|Gene_ORFName=LSAT_V11C500286660\|UniProtKB=A0A9R1XD54	Lactuca sativa	O
LACSA\|Gene_ORFName=LSAT_V11C600308440\|UniProtKB=A0A9R1V8U4	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a013076mg\|UniProtKB=A0A022QUX6	Erythranthe guttata	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a014186mg\|UniProtKB=A0A022S4F7	Erythranthe guttata	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400009210\|UniProtKB=M1AJ01	Solanum tuberosum	O
TOBAC\|Gene=LOC107793126\|UniProtKB=A0A1S4A2P2	Nicotiana tabacum	O
TOBAC\|Gene=LOC107830894\|UniProtKB=A0A1S4DKZ7	Nicotiana tabacum	O
SOLTU\|EnsemblGenome=PGSC0003DMG400026119\|UniProtKB=M1CGU5	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc06g065475.1\|UniProtKB=K4C7H6	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107832231\|UniProtKB=A0A1S4DQ26	Nicotiana tabacum	O
TOBAC\|Gene=LOC107793685\|UniProtKB=A0A1S4A4G2	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi04g01672\|UniProtKB=D7U4F5	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_J00743\|UniProtKB=A0A059ACM9	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=DARMORV10_A08P02680.1\|UniProtKB=A0A078I917	Brassica napus	LDO
BRANA\|Gene_ORFName=DARMORV10_C03P90160.1\|UniProtKB=A0A078IU14	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra014288\|UniProtKB=M4DCS1	Brassica campestris	LDO
BRANA\|Gene_ORFName=DARMORV10_A05P19520.1\|UniProtKB=A0A078I2V1	Brassica napus	O
BRACM\|EnsemblGenome=Bra030436\|UniProtKB=M4ENR6	Brassica campestris	O
BRANA\|Gene_ORFName=GSBRNA2T00093841001\|UniProtKB=A0A078IK55	Brassica napus	O
BRANA\|Gene_ORFName=DARMORV10_A06P02460.1\|UniProtKB=A0A078G8S9	Brassica napus	O
BRACM\|EnsemblGenome=Bra018912\|UniProtKB=M4DQW9	Brassica campestris	O
ARATH\|TAIR=locus=2033888\|UniProtKB=F4I9J7	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107939456\|UniProtKB=A0A1U8MN88	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107889297\|UniProtKB=A0A1U8I0H1	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107945095\|UniProtKB=A0A1U8N642	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107959274\|UniProtKB=A0A1U8PKN5	Gossypium hirsutum	O
GOSHI\|Gene=LOC107902789\|UniProtKB=A0A1U8J888	Gossypium hirsutum	O
GOSHI\|Gene=LOC107891439\|UniProtKB=A0A1U8I689	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_040864\|UniProtKB=A0A061GTK7	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g043064mg\|UniProtKB=A0A067FDE7	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_009G051000v3\|UniProtKB=U5G3K9	Populus trichocarpa	O
POPTR\|Gene_ORFName=POPTR_006G048300\|UniProtKB=A0A3N7GCJ7	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_001G255600v3\|UniProtKB=A9PCB0	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_06G162200\|UniProtKB=A0A2C9VSX3	Manihot esculenta	O
MANES\|EnsemblGenome=MANES_14G004400\|UniProtKB=A0A2C9UJD7	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_1578700\|UniProtKB=B9RIF4	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_11G015500\|UniProtKB=C6T3K0	Glycine max	LDO
SOYBN\|EnsemblGenome=GLYMA_13G206200\|UniProtKB=A0A0R0GRH4	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_01G227300\|UniProtKB=I1JAG0	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_3g054060\|UniProtKB=A0A072UWY4	Medicago truncatula	O
MEDTR\|EnsemblGenome=MTR_5g008890\|UniProtKB=G7K988	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr05_14580\|UniProtKB=A0A2I4G780	Juglans regia	LDO
JUGRE\|EnsemblGenome=Jr14_19220\|UniProtKB=A0A2I4F1I0	Juglans regia	O
CUCSA\|EnsemblGenome=Csa_1G616290\|UniProtKB=A0A0A0M2V3	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_7G055300\|UniProtKB=M5WAP7	Prunus persica	O
PRUPE\|EnsemblGenome=PRUPE_4G255000\|UniProtKB=A0A251PQY6	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_100512\|UniProtKB=D8RS01	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c20_17650\|UniProtKB=A0A2K1IVL6	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c11_21740\|UniProtKB=A0A2K1JVM3	Physcomitrella patens	LDO
PHYPA\|EnsemblGenome=Pp3c7_3000\|UniProtKB=A0A2K1KA33	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0141s0030\|UniProtKB=A0A2R6W6G8	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_005840040\|UniProtKB=A0A1Y1ILF9	Klebsormidium nitens	LDO