PANTHER Gene Information

Gene Symbol(s):

RDM16

Organism:

Arabidopsis thaliana

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Gene Name:

Protein RDM16

Gene ID:

2010519

Protein ID:

Q9C7E7

Persistent Id:

PTN000368305

Alternate Ids:

NM_001332797(refSeq)	RDM16_ARATH(UniProtKB-ID)
AY126993(EMBL)	ANM58979(EMBL-CDS)
1063686877(GI)	locus:2010519(TAIR)
AT1G28060(Ensembl_PRO)	RDM16(Synonym)
RDM16{ECO:0000303\|PubMed:24068953}(Symbol)	839699(GeneID)
AT1G28060(Ensembl)	AT1G28060(Ensembl_TRS)
Q8H0S1(AltAccession)
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PANTHER Classification

PANTHER Family:	U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED (PTHR14212)
PANTHER Subfamily:	U4_U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP3 (PTHR14212:SF0)
PANTHER GO-slim Molecular Function:
PANTHER GO-slim Biological Process:	mRNA splicing, via spliceosome
PANTHER GO-slim Cellular Component:	U4/U6 x U5 tri-snRNP complex
PANTHER protein class:	RNA splicing factor

Pathway Categories:

mRNA splicing

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	molecular_function
GO BP Complete:	embryo development ending in seed dormancy, gene silencing by siRNA-directed DNA methylation, mRNA splicing, via spliceosome
GO CC Complete:	nucleus, U4/U6 x U5 tri-snRNP complex, nucleoplasm

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=17348\|UniProtKB=O43395	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000047819.1\|UniProtKB=A0A2I3SC59	Pan troglodytes	O
PANTR\|Ensembl=ENSPTRG00000001254.5\|UniProtKB=G2HGL9	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000013174.3\|UniProtKB=G3RBJ7	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000016301.4\|UniProtKB=F7GUG7	Macaca mulatta	LDO
MOUSE\|MGI=MGI=1918017\|UniProtKB=Q922U1	Mus musculus	LDO
RAT\|RGD=1310555\|UniProtKB=A0A0G2JTI7	Rattus norvegicus	LDO
BOVIN\|Gene=PRPF3\|UniProtKB=Q2KIA6	Bos taurus	O
BOVIN\|Ensembl=ENSBTAG00000013946.4\|UniProtKB=F2Z4C4	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000030119.4\|UniProtKB=A0A287BNS2	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000019840.4\|UniProtKB=A0A9L0T345	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000013940.6\|UniProtKB=M3WJS5	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845017034.1\|UniProtKB=A0A8I3RZL8	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000018774.4\|UniProtKB=K7E1G2	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000036562.1\|UniProtKB=A0A6I8NW03	Ornithorhynchus anatinus	LDO
CHICK\|Gene_ORFName=RCJMB04_20b24\|UniProtKB=Q5ZJ85	Gallus gallus	O
CHICK\|Ensembl=ENSGALG00010028606.1\|UniProtKB=A0A8V1AJK4	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000003176.4\|UniProtKB=H9G791	Anolis carolinensis	LDO
XENLA\|Gene=prpf3.S\|UniProtKB=A0A8J1LLJ6	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-996787\|UniProtKB=F7B9I0	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000010330.2\|UniProtKB=H2M3E0	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-040823-3\|UniProtKB=A4QP06	Danio rerio	LDO
CIOIN\|Ensembl=ENSCING00000003312.3\|UniProtKB=F6TBF9	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118411247\|UniProtKB=A0A9J7KT58	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC575001\|UniProtKB=A0A7M7SYX6	Strongylocentrotus purpuratus	LDO
STRPU\|EnsemblGenome=LOC105437086\|UniProtKB=A0A7M7PUY7	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00010844\|UniProtKB=Q21486	Caenorhabditis elegans	LDO
CAEBR\|WormBase=WBGene00037825\|UniProtKB=A8XSL3	Caenorhabditis briggsae	LDO
DROME\|FlyBase=FBgn0036915\|UniProtKB=Q9VW52	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP004682\|UniProtKB=Q7QL36	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC000245\|UniProtKB=D6WBT3	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_308637\|UniProtKB=E9H8L4	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW021269\|UniProtKB=B7Q665	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG98250\|UniProtKB=T1G9L3	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g235197\|UniProtKB=A7SAL9	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG37477\|UniProtKB=B3RU41	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_20505\|UniProtKB=A9UW58	Monosiga brevicollis	LDO
YEAST\|SGD=S000002881\|UniProtKB=Q03338	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_AEL234C\|UniProtKB=Q758J6	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000177949\|UniProtKB=Q5AH86	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_B05632g\|UniProtKB=Q6CFM5	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_00727\|UniProtKB=Q5BFF3	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_1G13890\|UniProtKB=E9RBE2	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU01637\|UniProtKB=Q1K4S2	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_09605\|UniProtKB=A7EW96	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_14954\|UniProtKB=Q0U0A1	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPAC29E6.02\|UniProtKB=Q09856	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_01634\|UniProtKB=B6JYH2	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CNC02980\|UniProtKB=Q5KKH6	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_03964\|UniProtKB=A0A0D1CMH6	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_04407\|UniProtKB=E3K282	Puccinia graminis	LDO
DICDI\|dictyBase=DDB_G0274213\|UniProtKB=Q8T2A7	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_96361\|UniProtKB=F0Z7K6	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_01_0560\|UniProtKB=E9AC47	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb09.160.2900\|UniProtKB=Q38FB1	Trypanosoma brucei	LDO
TRIV3\|Gene_ORFName=TVAG_033440\|UniProtKB=A2FJ09	Trichomonas vaginalis	LDO
PLAF7\|EnsemblGenome=PF3D7_1309300\|UniProtKB=Q8IEM1	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00010170001\|UniProtKB=A0CSY0	Paramecium tetraurelia	LDO
PARTE\|EnsemblGenome=GSPATT00004211001\|UniProtKB=A0EDH5	Paramecium tetraurelia	LDO
THAPS\|EnsemblGenome=THAPSDRAFT_9108\|UniProtKB=B8CAE0	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3GNM0_PHYRM\|UniProtKB=H3GNM0	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_09g416000v5\|UniProtKB=A0A2K3DFZ6	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00019p00169230\|UniProtKB=W1PJE3	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_259G00210\|UniProtKB=A0A0K9PFR9	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma10_g16350\|UniProtKB=A0A804KWX3	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_028912mg\|UniProtKB=K3ZQN2	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3004G115350\|UniProtKB=A0A1Z5RLV9	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb204030\|UniProtKB=A0A1D6QP50	Zea mays	O
MAIZE\|EnsemblGenome=Zm00001eb238080\|UniProtKB=A0A1D6H5E5	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os09g0249600\|UniProtKB=A0A0N7KQF0	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_3g02870v3\|UniProtKB=A0A2K2CUU2	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.5HG0469310\|UniProtKB=F2CSX8	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS7A02G082700\|UniProtKB=A0A3B6RCF7	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS5B02G165100\|UniProtKB=A0A3B6LIZ5	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS7A02G082800\|UniProtKB=A0A3B6RCK6	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS4A02G380600\|UniProtKB=A0A3B6I4F2	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS5A02G168300\|UniProtKB=A0A3B6KEE5	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS5D02G172500\|UniProtKB=A0A3B6MRF1	Triticum aestivum	O
NELNU\|Gene=LOC104594680\|UniProtKB=A0A1U7ZNM6	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110789644\|UniProtKB=A0A9R0IIQ1	Spinacia oleracea	LDO
HELAN\|Gene_ORFName=HanXRQr2_Chr16g0778291\|UniProtKB=A0A9K3DYE1	Helianthus annuus	O
HELAN\|Gene_ORFName=HannXRQ_Chr16g0532861\|UniProtKB=A0A251S3Z5	Helianthus annuus	O
HELAN\|Gene_ORFName=HanXRQr2_Chr15g0699731\|UniProtKB=A0A9K3E310	Helianthus annuus	LDO
HELAN\|Gene_ORFName=HannXRQ_Chr15g0482981\|UniProtKB=A0A251SAY8	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C300126860\|UniProtKB=A0A9R1W2R9	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv11b018703mg\|UniProtKB=A0A022QCT3	Erythranthe guttata	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a001331mg\|UniProtKB=A0A022PVP7	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_34019\|UniProtKB=A0A2G2XX93	Capsicum annuum	O
CAPAN\|EnsemblGenome=T459_21634\|UniProtKB=A0A2G2YX71	Capsicum annuum	O
CAPAN\|EnsemblGenome=T459_22924\|UniProtKB=A0A2G2YQX5	Capsicum annuum	O
CAPAN\|EnsemblGenome=T459_28678\|UniProtKB=A0A2G2YHX8	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400023507\|UniProtKB=M1C5V4	Solanum tuberosum	O
SOLLC\|EnsemblGenome=Solyc05g054880.3\|UniProtKB=A0A3Q7GKV0	Solanum lycopersicum	O
SOLTU\|EnsemblGenome=PGSC0003DMG400002376\|UniProtKB=M0ZQU8	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc06g036580.3\|UniProtKB=A0A3Q7HM61	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107792183\|UniProtKB=A0A1S3ZZX5	Nicotiana tabacum	O
TOBAC\|Gene=LOC107811721\|UniProtKB=A0A1S4BTJ1	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi13g00222\|UniProtKB=D7T479	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_G02772\|UniProtKB=A0A059BGZ5	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=GSBRNA2T00001424001\|UniProtKB=A0A078FBD6	Brassica napus	O
BRANA\|Gene_ORFName=GSBRNA2T00065083001\|UniProtKB=A0A078HJL1	Brassica napus	O
BRANA\|Gene_ORFName=GSBRNA2T00062647001\|UniProtKB=A0A078HGD3	Brassica napus	O
BRACM\|EnsemblGenome=Bra015495\|UniProtKB=M4DG72	Brassica campestris	O
BRANA\|Gene_ORFName=GSBRNA2T00049973001\|UniProtKB=A0A078FFL2	Brassica napus	O
BRACM\|EnsemblGenome=Bra010907\|UniProtKB=M4D354	Brassica campestris	O
BRANA\|Gene_ORFName=GSBRNA2T00089464001\|UniProtKB=A0A078IC37	Brassica napus	LDO
BRANA\|EnsemblGenome=GSBRNA2T00066876001\|UniProtKB=A0A078JMZ4	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra032868\|UniProtKB=M4EVN5	Brassica campestris	LDO
GOSHI\|Gene=LOC107891161\|UniProtKB=A0A1U8HZB1	Gossypium hirsutum	O
GOSHI\|Gene=LOC107930725\|UniProtKB=A0A1U8LWY7	Gossypium hirsutum	O
GOSHI\|Gene=LOC107941564\|UniProtKB=A0A1U8MUV5	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_043010\|UniProtKB=A0A061FND1	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g003362mg\|UniProtKB=A0A067FNX0	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_008G048000v3\|UniProtKB=A0A2K1ZBX9	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_010G213300v3\|UniProtKB=B9HTY5	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_10G038800\|UniProtKB=A0A2C9V540	Manihot esculenta	O
MANES\|EnsemblGenome=MANES_07G106800\|UniProtKB=A0A2C9VKB2	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0745880\|UniProtKB=B9SGG8	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_11G012500\|UniProtKB=K7LMH4	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_01G229700\|UniProtKB=I1JAI8	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_20G241900\|UniProtKB=A0A0R0ESI3	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_4g094355\|UniProtKB=A0A072UPH8	Medicago truncatula	O
MEDTR\|EnsemblGenome=MTR_5g039050\|UniProtKB=G7KB64	Medicago truncatula	O
MEDTR\|EnsemblGenome=MTR_1g115920\|UniProtKB=G7IF06	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr07_35730\|UniProtKB=A0A2I4F8S3	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_5G177130\|UniProtKB=A0A0A0KLQ4	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_2G224900\|UniProtKB=M5X740	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_169615\|UniProtKB=D8R9F1	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_41308\|UniProtKB=D8TAH2	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c14_26820\|UniProtKB=A0A7I4AZP4	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0014s0207\|UniProtKB=A0A2R6XHZ0	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_006080040\|UniProtKB=A0A1Y1IPV0	Klebsormidium nitens	LDO