PANTHER Gene Information

Gene Symbol(s):

syf-1

Organism:

Caenorhabditis briggsae

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Gene Name:

Protein CBG11979

Gene ID:

CBG11979

Protein ID:

A8XER0

Persistent Id:

PTN001343305

Alternate Ids:

CBG11979(WormBase_TRS)	CBP17334(WormBase_PRO)
A8XER0_CAEBR(UniProtKB-ID)	CAP31028(EMBL-CDS)
A8XER0(Synonym)	HE601540(EMBL)
WBGene00032996(WormBase)	309360547(GI)
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PANTHER Classification

PANTHER Family:	PRE-MRNA SPLICING FACTOR (PTHR11246)
PANTHER Subfamily:	PRE-MRNA-SPLICING FACTOR SYF1 (PTHR11246:SF5)
PANTHER GO-slim Molecular Function:
PANTHER GO-slim Biological Process:	mRNA splicing, via spliceosome protein-RNA complex assembly
PANTHER GO-slim Cellular Component:	catalytic step 2 spliceosome U2-type spliceosomal complex Prp19 complex post-mRNA release spliceosomal complex
PANTHER protein class:	RNA splicing factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	-
GO BP Complete:	RNA splicing, generation of catalytic spliceosome for first transesterification step, mRNA processing, mRNA splicing, via spliceosome
GO CC Complete:	nucleus, post-mRNA release spliceosomal complex, spliceosomal complex, U2-type catalytic step 2 spliceosome, Prp19 complex

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=14089\|UniProtKB=Q9HCS7	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000010395.5\|UniProtKB=K7BVP4	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000002447.3\|UniProtKB=G3QJ28	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000009539.4\|UniProtKB=A0A5K1TW13	Macaca mulatta	LDO
MOUSE\|MGI=MGI=1914689\|UniProtKB=Q9DCD2	Mus musculus	LDO
RAT\|RGD=621217\|UniProtKB=Q99PK0	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000011360.6\|UniProtKB=A4FUD8	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000013582.5\|UniProtKB=A0A5G2R0G6	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000010502.4\|UniProtKB=F7CNK0	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000001594.6\|UniProtKB=M3VWX6	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845027506.1\|UniProtKB=A0A8I3Q207	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000015022.4\|UniProtKB=F7BXF8	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000037563.1\|UniProtKB=A0A6I8P5B1	Ornithorhynchus anatinus	LDO
ANOCA\|Ensembl=ENSACAG00000017173.4\|UniProtKB=G1KTM1	Anolis carolinensis	LDO
XENLA\|Gene=xab2.L\|UniProtKB=A0JPH9	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-1009276\|UniProtKB=B5DDV4	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000006076.2\|UniProtKB=H2LNL3	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-040426-685\|UniProtKB=Q1LY92	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000006992.1\|UniProtKB=W5MJA1	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000006985.3\|UniProtKB=F6SBF1	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118420439\|UniProtKB=A0A9J7LI11	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC755644\|UniProtKB=A0A7M7PLR4	Strongylocentrotus purpuratus	LDO
STRPU\|EnsemblGenome=LOC115929146\|UniProtKB=A0A7M7PKN3	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00016837\|UniProtKB=P91175	Caenorhabditis elegans	LDO
PRIPA\|EnsemblGenome=WBGene00118206\|UniProtKB=A0A2A6CZ65	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0033859\|UniProtKB=A1Z9G2	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP012369\|UniProtKB=A0A1S4H931	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC031132\|UniProtKB=A0A139WHY2	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_313169\|UniProtKB=E9G324	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW023297\|UniProtKB=B7QIT4	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG100710\|UniProtKB=T1ED14	helobdella robusta	LDO
TRIAD\|EnsemblGenome=TriadG21689\|UniProtKB=B3RP50	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_28344\|UniProtKB=A9V7W6	Monosiga brevicollis	LDO
YEAST\|SGD=S000002824\|UniProtKB=Q04048	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_AAR131W\|UniProtKB=Q75EF0	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000190481\|UniProtKB=A0A1D8PMK6	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_D00561g\|UniProtKB=Q6CAR6	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_00111\|UniProtKB=Q5BH69	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_5G11910\|UniProtKB=Q4WVF4	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU08036\|UniProtKB=Q7SAK5	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_08581\|UniProtKB=A7ETC6	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_08930\|UniProtKB=Q0UH34	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPBC211.02c\|UniProtKB=Q9P7R9	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_00859\|UniProtKB=B6JWT4	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CNE01310\|UniProtKB=P0CO08	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_03842\|UniProtKB=Q4P7S1	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_03721\|UniProtKB=E3K0E0	Puccinia graminis	O
PUCGT\|EnsemblGenome=PGTG_06673\|UniProtKB=E3K899	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_795\|UniProtKB=F4NXF6	Batrachochytrium dendrobatidis	LDO
ENTH1\|EnsemblGenome=CL6EHI_073300\|UniProtKB=C4LXJ5	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0277977\|UniProtKB=Q54Z08	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_97283\|UniProtKB=F0ZFD2	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_23_1550\|UniProtKB=Q4QAY3	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb927.5.1340\|UniProtKB=Q57VC9	Trypanosoma brucei	LDO
TRIV3\|Gene_ORFName=TVAG_258450\|UniProtKB=A2E949	Trichomonas vaginalis	LDO
PLAF7\|EnsemblGenome=PF3D7_1235900\|UniProtKB=A0A144A2S8	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00019746001\|UniProtKB=A0DSN6	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00009242001\|UniProtKB=A0CQ27	Paramecium tetraurelia	LDO
THAPS\|EnsemblGenome=THAPSDRAFT_28004\|UniProtKB=B8C032	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3G9H3_PHYRM\|UniProtKB=H3G9H3	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_12g513500v5\|UniProtKB=A0A2K3D3K4	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00060p00216060\|UniProtKB=W1NL76	Amborella trichopoda	O
AMBTC\|EnsemblGenome=AMTR_s00010p00243220\|UniProtKB=W1NGL3	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_344G00050\|UniProtKB=A0A0K9P9Q1	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma09_g04310\|UniProtKB=A0A804KFV3	Musa acuminata subsp. malaccensis	LDO
SORBI\|EnsemblGenome=SORBI_3010G097100\|UniProtKB=C5Z7G6	Sorghum bicolor	O
ORYSJ\|EnsemblGenome=Os06g0235800\|UniProtKB=Q67V88	Oryza sativa	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.5HG0487200\|UniProtKB=A0A8I6XZG1	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS7D02G193900\|UniProtKB=A0A3B6TGA4	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS7B02G098000\|UniProtKB=A0A3B6SFW8	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS4B02G183500\|UniProtKB=A0A3B6ITX1	Triticum aestivum	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.7HG0667370\|UniProtKB=A0A8I6YLD9	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS7A02G192600\|UniProtKB=A0A3B6RFY7	Triticum aestivum	O
SETIT\|EnsemblGenome=SETIT_028853mg\|UniProtKB=K3ZQH3	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3002G396000\|UniProtKB=C5X3Z7	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb110380\|UniProtKB=A0A1D6F2G7	Zea mays	O
MAIZE\|EnsemblGenome=Zm00001eb329230\|UniProtKB=A0A1D6IL61	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os07g0644300\|UniProtKB=Q8LIB1	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_1g19690v3\|UniProtKB=I1GRS4	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.2HG0119160\|UniProtKB=F2DLP9	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS2A02G142400\|UniProtKB=A0A3B6AT01	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS2D02G145800\|UniProtKB=A0A1D5UWX6	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS2B02G167600\|UniProtKB=A0A3B6C1P8	Triticum aestivum	LDO
NELNU\|Gene=LOC104588638\|UniProtKB=A0A1U7ZCD1	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110785053\|UniProtKB=A0A9R0JSR0	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr01g0026571\|UniProtKB=A0A251VNN7	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C100042920\|UniProtKB=A0A9R1WHG2	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a001257mg\|UniProtKB=A0A022QK02	Erythranthe guttata	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a0010071mg\|UniProtKB=A0A022QUT7	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_09795\|UniProtKB=A0A1U8G7X9	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400006877\|UniProtKB=M1A9C8	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc01g086990.3\|UniProtKB=A0A3Q7EIE2	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107819808\|UniProtKB=A0A1S4CJP3	Nicotiana tabacum	LDO
TOBAC\|Gene=LOC107763122\|UniProtKB=A0A1S3XAT8	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi10g00387\|UniProtKB=F6H863	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_E03448\|UniProtKB=A0A059C9V3	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=GSBRNA2T00055388001\|UniProtKB=A0A078H7P8	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra020619\|UniProtKB=M4DVS5	Brassica campestris	LDO
ARATH\|TAIR=locus=2184236\|UniProtKB=Q9LKU3	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107913998\|UniProtKB=A0A1U8KC12	Gossypium hirsutum	O
GOSHI\|Gene=LOC107924019\|UniProtKB=A0A1U8L555	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_029973\|UniProtKB=A0A061GMQ4	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g002477mg\|UniProtKB=A0A067GK26	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_011G043900v3\|UniProtKB=A0A2K1YFF7	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_004G035600v3\|UniProtKB=B9H231	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_17G039900\|UniProtKB=A0A2C9U5L4	Manihot esculenta	O
MANES\|EnsemblGenome=MANES_16G021600\|UniProtKB=A0A2C9U864	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_1063020\|UniProtKB=B9S614	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_15G068100\|UniProtKB=I1MEB0	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_13G245700\|UniProtKB=K7M1P8	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_2g012310\|UniProtKB=G7ILD9	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr03_19140\|UniProtKB=A0A2I4DN59	Juglans regia	O
JUGRE\|EnsemblGenome=Jr03_19150\|UniProtKB=A0A2I4G3A8	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_6G517050\|UniProtKB=A0A0A0KLE6	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_5G013200\|UniProtKB=M5WQJ0	Prunus persica	O
PRUPE\|EnsemblGenome=PRUPE_4G035800\|UniProtKB=A0A251PF52	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_79566\|UniProtKB=D8QY84	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_232369\|UniProtKB=D8RTX1	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c1_10210\|UniProtKB=A9SYX9	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0119s0057\|UniProtKB=A0A2R6WAH8	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_007810010\|UniProtKB=A0A1Y1IRZ2	Klebsormidium nitens	LDO