PANTHER Gene Information

Gene Symbol(s):

Csa_2G172520

Organism:

Cucumis sativus

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Gene Name:

RRM domain-containing protein

Gene ID:

Csa_2G172520

Protein ID:

A0A0A0LLH4

Persistent Id:

PTN004611007

Alternate Ids:

A0A0A0LLH4(Synonym)	Csa_2G172520(Ensembl)
CM002923(EMBL)	KGN61582(EMBL-CDS)
700206463(GI)	A0A0A0LLH4_CUCSA(UniProtKB-ID)
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PANTHER Classification

PANTHER Family:	RNA-BINDING PROTEIN (PTHR23139)
PANTHER Subfamily:	RNA-BINDING (RRM_RBD_RNP MOTIFS) FAMILY PROTEIN (PTHR23139:SF56)
PANTHER GO-slim Molecular Function:	pre-mRNA binding single-stranded RNA binding
PANTHER GO-slim Biological Process:	spliceosomal complex assembly
PANTHER GO-slim Cellular Component:	U2-type prespliceosome nuclear speck
PANTHER protein class:

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	RNA binding, pre-mRNA 3'-splice site binding, poly-pyrimidine tract binding
GO BP Complete:	RNA splicing, mRNA processing, spliceosomal complex assembly
GO CC Complete:	commitment complex, U2AF complex, nuclear speck, U2-type prespliceosome

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=23156\|UniProtKB=P26368	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000011523.5\|UniProtKB=K6ZG02	Pan troglodytes	O
MACMU\|Ensembl=ENSMMUG00000004810.4\|UniProtKB=F6RZR0	Macaca mulatta	O
MOUSE\|MGI=MGI=98886\|UniProtKB=P26369	Mus musculus	O
RAT\|RGD=1310690\|UniProtKB=A0A8I6A9Y1	Rattus norvegicus	O
RAT\|RGD=1310690\|UniProtKB=A0A8I6A9Y1	Rattus norvegicus	O
BOVIN\|Ensembl=ENSBTAG00000002830.6\|UniProtKB=Q24JZ8	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000034815.3\|UniProtKB=A0A481APG3	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000010110.4\|UniProtKB=A0A9L0S799	Equus caballus	O
CANLF\|Ensembl=ENSCAFG00845000480.1\|UniProtKB=A0A8I3RP62	Canis lupus familiaris	O
ORNAN\|Ensembl=ENSOANG00000040411.1\|UniProtKB=A0A6I8PMQ0	Ornithorhynchus anatinus	O
ANOCA\|Ensembl=ENSACAG00000015489.3\|UniProtKB=H9GMF2	Anolis carolinensis	O
XENLA\|Gene=u2af2.S\|UniProtKB=A0A1L8FGS2	Xenopus laevis	O
XENLA\|Gene=LOC108696656\|UniProtKB=A0A1L8FMU9	Xenopus laevis	O
XENTR\|Xenbase=XB-GENE-494184\|UniProtKB=Q6NVN9	Xenopus tropicalis	O
ORYLA\|Ensembl=ENSORLG00000011545.2\|UniProtKB=H2M7K7	Oryzias latipes	O
DANRE\|ZFIN=ZDB-GENE-050706-131\|UniProtKB=E7F8Y4	Danio rerio	O
DANRE\|ZFIN=ZDB-GENE-040426-1881\|UniProtKB=A0A0R4IMP0	Danio rerio	O
LEPOC\|Ensembl=ENSLOCG00000010843.1\|UniProtKB=W5MY30	lepisosteus oculatus	O
LEPOC\|Ensembl=ENSLOCG00000008050.1\|UniProtKB=W5MN22	lepisosteus oculatus	O
CIOIN\|Ensembl=ENSCING00000003455.3\|UniProtKB=F6UAX7	Ciona intestinalis	O
BRAFL\|Gene=LOC118429074\|UniProtKB=A0A9J7M6W8	Branchiostoma floridae	O
STRPU\|EnsemblGenome=LOC588126\|UniProtKB=A0A7M7HKD8	Strongylocentrotus purpuratus	O
CAEEL\|WormBase=WBGene00006697\|UniProtKB=P90978	Caenorhabditis elegans	O
CAEBR\|WormBase=WBGene00035480\|UniProtKB=P90727	Caenorhabditis briggsae	O
PRIPA\|EnsemblGenome=WBGene00114928\|UniProtKB=A0A2A6CQR2	Pristionchus pacificus	O
DROME\|FlyBase=FBgn0034834\|UniProtKB=Q9W1T4	Drosophila melanogaster	O
DROME\|FlyBase=FBgn0005411\|UniProtKB=Q24562	Drosophila melanogaster	O
ANOGA\|EnsemblGenome=AGAP002908\|UniProtKB=Q7QD20	Anopheles gambiae	O
TRICA\|EnsemblGenome=TC005736\|UniProtKB=D6WWI5	Tribolium castaneum	O
DAPPU\|EnsemblGenome=DAPPUDRAFT_232197\|UniProtKB=E9FS33	Daphnia pulex	O
IXOSC\|EnsemblGenome=ISCW002946\|UniProtKB=B7PCK4	Ixodes scapularis	O
HELRO\|EnsemblGenome=HelroG186326\|UniProtKB=T1FNY6	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG185543\|UniProtKB=T1FMY6	helobdella robusta	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g228171\|UniProtKB=A7RJT7	Nematostella vectensis	O
TRIAD\|EnsemblGenome=TriadG21652\|UniProtKB=B3RQ51	Trichoplax adhaerens	O
MONBE\|EnsemblGenome=MONBRDRAFT_1352\|UniProtKB=A9UNN4	Monosiga brevicollis	O
YEAST\|SGD=S000001557\|UniProtKB=P36084	Saccharomyces cerevisiae	O
EREGS\|EnsemblGenome=AGOS_ADR130W\|UniProtKB=Q759Z3	Eremothecium gossypii	O
CANAL\|CGD=CAL0000187516\|UniProtKB=A0A1D8PGR8	Candida albicans	O
YARLI\|EnsemblGenome=YALI0_E09889g\|UniProtKB=Q6C6F8	Yarrowia lipolytica	O
EMENI\|EnsemblGenome=ANIA_06681\|UniProtKB=C8V1L6	Emericella nidulans	O
ASPFU\|EnsemblGenome=AFUA_7G05310\|UniProtKB=Q4WGK1	Neosartorya fumigata	O
NEUCR\|EnsemblGenome=NCU00231\|UniProtKB=Q7RZY0	Neurospora crassa	O
NEUCR\|EnsemblGenome=NCU03039\|UniProtKB=Q7SDG9	Neurospora crassa	O
SCLS1\|EnsemblGenome=SS1G_02977\|UniProtKB=A7ECD8	Sclerotinia sclerotiorum	O
PHANO\|EnsemblGenome=SNOG_04461\|UniProtKB=Q0UUV3	Phaeosphaeria nodorum	O
SCHPO\|PomBase=SPBC146.07\|UniProtKB=P36629	Schizosaccharomyces pombe	O
SCHJY\|EnsemblGenome=SJAG_03995\|UniProtKB=B6K5L9	Schizosaccharomyces japonicus	O
CRYNJ\|EnsemblGenome=CNF01250\|UniProtKB=Q5KFM4	Cryptococcus neoformans	O
USTMA\|EnsemblGenome=UMAG_05363\|UniProtKB=A0A0D1CHB4	Ustilago maydis	O
PUCGT\|EnsemblGenome=PGTG_22302\|UniProtKB=H6QU19	Puccinia graminis	O
BATDJ\|Gene_ORFName=BATDEDRAFT_21058\|UniProtKB=F4PE51	Batrachochytrium dendrobatidis	O
ENTH1\|EnsemblGenome=CL6EHI_098300\|UniProtKB=C4LXB3	Entamoeba histolytica	O
DICDI\|dictyBase=DDB_G0286395\|UniProtKB=Q54LV5	Dictyostelium discoideum	O
DICPU\|EnsemblGenome=DICPUDRAFT_56283\|UniProtKB=F0ZQL5	Dictyostelium purpureum	O
LEIMA\|EnsemblGenome=LMJF_03_0520\|UniProtKB=E9ACJ7	Leishmania major	O
TRYB2\|Gene_ORFName=Tb10.70.3950\|UniProtKB=Q38BP9	Trypanosoma brucei	O
TRIV3\|Gene_ORFName=TVAG_453940\|UniProtKB=A2DPX0	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_062480\|UniProtKB=A2DLL0	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_417030\|UniProtKB=A2ESG1	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_056670\|UniProtKB=A2ECM6	Trichomonas vaginalis	O
PLAF7\|Gene_ORFName=PF3D7_1326300\|UniProtKB=A0A5K1K940	Plasmodium falciparum	O
PLAF7\|EnsemblGenome=PF3D7_0716000\|UniProtKB=Q8IBU0	Plasmodium falciparum	O
PLAF7\|EnsemblGenome=PF3D7_1468800\|UniProtKB=Q8IKE9	Plasmodium falciparum	O
PARTE\|EnsemblGenome=GSPATT00011065001\|UniProtKB=A0CXB6	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00020344001\|UniProtKB=A0DUF5	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00039350001\|UniProtKB=A0DA33	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00021019001\|UniProtKB=A0DWG0	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00023584001\|UniProtKB=A0E540	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00022927001\|UniProtKB=A0E387	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00006257001\|UniProtKB=A0C4P1	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00024974001\|UniProtKB=A0EAC5	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00007366001\|UniProtKB=A0CGK9	Paramecium tetraurelia	O
THAPS\|EnsemblGenome=THAPSDRAFT_263000\|UniProtKB=B8C4E7	Thalassiosira pseudonana	O
PHYRM\|Gene=H3GVM8_PHYRM\|UniProtKB=H3GVM8	Phytophthora ramorum	O
PHYRM\|Gene=H3GDY4_PHYRM\|UniProtKB=H3GDY4	Phytophthora ramorum	O
PHYRM\|Gene=H3GIY2_PHYRM\|UniProtKB=H3GIY2	Phytophthora ramorum	O
CHLRE\|EnsemblGenome=CHLRE_13g607850v5\|UniProtKB=A0A2K3D1J8	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_02g093975v5\|UniProtKB=A0A2K3E1C6	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_12g499750v5\|UniProtKB=A0A2K3D3A9	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_12g549100v5\|UniProtKB=A0A2K3D6A2	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_16g695450v5\|UniProtKB=A0A2K3CSA5	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_07g352650v5\|UniProtKB=A0A2K3DLE6	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_09g391949v5\|UniProtKB=A0A2K3DE86	Chlamydomonas reinhardtii	O
AMBTC\|EnsemblGenome=AMTR_s00067p00176230\|UniProtKB=U5D9L2	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_307G00170\|UniProtKB=A0A0K9P9Y0	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma11_g02460\|UniProtKB=A0A804L3F4	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_034089mg\|UniProtKB=K4A5D5	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3001G511500\|UniProtKB=C5WYY2	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb402770\|UniProtKB=A0A804RAU4	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os01g0956600\|UniProtKB=Q5JJU2	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_1g75860v3\|UniProtKB=I1H9Y8	Brachypodium distachyon	LDO
NELNU\|Gene_ORFName=HUJ06_029034\|UniProtKB=A0A1U8QB70	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110788893\|UniProtKB=A0A9R0IH31	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr11g0503851\|UniProtKB=A0A251V0J9	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C100030090\|UniProtKB=A0A9R1WQY1	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a000890mg\|UniProtKB=A0A022PS14	Erythranthe guttata	LDO
SOLLC\|EnsemblGenome=Solyc09g090420.3\|UniProtKB=A0A3Q7J393	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107806722\|UniProtKB=A0A1S4BBX3	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi05g00796\|UniProtKB=F6H8J3	Vitis vinifera	LDO
BRACM\|EnsemblGenome=Bra022941\|UniProtKB=M4E2E1	Brassica campestris	LDO
ARATH\|TAIR=locus=1005716652\|UniProtKB=F4IVU7	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107897745\|UniProtKB=A0A1U8ISA6	Gossypium hirsutum	O
GOSHI\|Gene=LOC107914941\|UniProtKB=A0A1U8KAH9	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_020947\|UniProtKB=A0A061EV26	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g002093mg\|UniProtKB=A0A067ES88	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_010G068400v3\|UniProtKB=A0A2K1YQ34	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_03G161700\|UniProtKB=A0A2C9WA48	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_1168220\|UniProtKB=B9SS44	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_10G005000\|UniProtKB=K7LGQ7	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_1g041735\|UniProtKB=A0A072VGZ7	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr07_22750\|UniProtKB=A0A2I4ENF0	Juglans regia	LDO
PRUPE\|EnsemblGenome=PRUPE_1G045200\|UniProtKB=A0A251QTL2	Prunus persica	LDO
MARPO\|EnsemblGenome=MARPO_0007s0229\|UniProtKB=A0A2R6XP33	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_000860160\|UniProtKB=A0A1Y1HSN4	Klebsormidium nitens	LDO