PANTHER Gene Information

Gene Symbol(s):

LOC107939800

Organism:

Gossypium hirsutum

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Gene Name:

RNA-dependent RNA polymerase

Gene ID:

LOC107939800

Protein ID:

I3NMV9

Persistent Id:

PTN004603999

Alternate Ids:

HQ650106(EMBL)	315307484(GI)
I3NMV9(Synonym)	ADU04145(EMBL-CDS)
107939800(GeneID)	XM_016873182(refSeq)
I3NMV9_GOSHI(UniProtKB-ID)
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PANTHER Classification

PANTHER Family:	RNA-DEPENDENT RNA POLYMERASE (PTHR23079)
PANTHER Subfamily:	RNA-DEPENDENT RNA POLYMERASE 2 (PTHR23079:SF5)
PANTHER GO-slim Molecular Function:	5'-3' RNA polymerase activity
PANTHER GO-slim Biological Process:	siRNA processing
PANTHER GO-slim Cellular Component:	nuclear protein-containing complex RNA polymerase complex
PANTHER protein class:	RNA metabolism protein

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	RNA binding, RNA-dependent RNA polymerase activity
GO BP Complete:	RNA-templated transcription, regulatory ncRNA-mediated gene silencing, siRNA processing
GO CC Complete:	nuclear RNA-directed RNA polymerase complex

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
BRAFL\|Gene=LOC118427356\|UniProtKB=A0A9J7M486	Branchiostoma floridae	O
BRAFL\|Gene=LOC118420943\|UniProtKB=A0A9J7MXQ8	Branchiostoma floridae	O
BRAFL\|Gene=LOC118428502\|UniProtKB=A0A9J7M4A9	Branchiostoma floridae	O
BRAFL\|Gene=LOC118429714\|UniProtKB=A0A9J7M7H1	Branchiostoma floridae	O
BRAFL\|Gene=LOC118428503\|UniProtKB=A0A9J7M4B0	Branchiostoma floridae	O
CAEEL\|WormBase=WBGene00004510\|UniProtKB=G5EE53	Caenorhabditis elegans	O
CAEBR\|Gene_ORFName=CBG00730\|UniProtKB=A8WN72	Caenorhabditis briggsae	O
PRIPA\|EnsemblGenome=WBGene00304839\|UniProtKB=A0A8R1V5S9	Pristionchus pacificus	O
CAEEL\|WormBase=WBGene00004509\|UniProtKB=G5EFA8	Caenorhabditis elegans	O
CAEEL\|WormBase=WBGene00004508\|UniProtKB=G5ECM1	Caenorhabditis elegans	O
CAEBR\|Gene_ORFName=CBG19448\|UniProtKB=A8XVP2	Caenorhabditis briggsae	O
CAEEL\|WormBase=WBGene00001214\|UniProtKB=G5EBQ3	Caenorhabditis elegans	O
CAEBR\|Gene_ORFName=CBG00321\|UniProtKB=A8WMP9	Caenorhabditis briggsae	O
PRIPA\|EnsemblGenome=WBGene00098113\|UniProtKB=A0A2A6BLL4	Pristionchus pacificus	O
PRIPA\|EnsemblGenome=WBGene00274061\|UniProtKB=A0A2A6BLU4	Pristionchus pacificus	O
PRIPA\|EnsemblGenome=WBGene00283817\|UniProtKB=A0A2A6CUJ9	Pristionchus pacificus	O
PRIPA\|EnsemblGenome=WBGene00271994\|UniProtKB=A0A2A6BNW3	Pristionchus pacificus	O
IXOSC\|EnsemblGenome=ISCW001005\|UniProtKB=B7P6P3	Ixodes scapularis	O
IXOSC\|EnsemblGenome=ISCW008905\|UniProtKB=B7Q238	Ixodes scapularis	O
IXOSC\|EnsemblGenome=ISCW008904\|UniProtKB=B7Q237	Ixodes scapularis	O
ASPFU\|EnsemblGenome=AFUA_5G09430\|UniProtKB=Q4WUR8	Neosartorya fumigata	O
NEUCR\|EnsemblGenome=NCU07534\|UniProtKB=Q1K6C4	Neurospora crassa	O
SCLS1\|EnsemblGenome=SS1G_03377\|UniProtKB=A7EDI7	Sclerotinia sclerotiorum	O
EMENI\|EnsemblGenome=ANIA_02717\|UniProtKB=Q5B9R3	Emericella nidulans	O
NEUCR\|EnsemblGenome=NCU08435\|UniProtKB=Q1K8P0	Neurospora crassa	O
SCLS1\|Gene_ORFName=SS1G_09915\|UniProtKB=A7EX56	Sclerotinia sclerotiorum	O
PHANO\|EnsemblGenome=SNOG_15784\|UniProtKB=Q0TXM0	Phaeosphaeria nodorum	O
EMENI\|EnsemblGenome=ANIA_04790\|UniProtKB=C8VAM8	Emericella nidulans	O
ASPFU\|EnsemblGenome=AFUA_3G06790\|UniProtKB=Q4WWR4	Neosartorya fumigata	O
NEUCR\|EnsemblGenome=NCU02178\|UniProtKB=Q1K907	Neurospora crassa	O
SCLS1\|EnsemblGenome=SS1G_13161\|UniProtKB=A7F6D2	Sclerotinia sclerotiorum	O
PHANO\|EnsemblGenome=SNOG_01986\|UniProtKB=Q0V1X8	Phaeosphaeria nodorum	O
PHANO\|EnsemblGenome=SNOG_14810\|UniProtKB=Q0TZW2	Phaeosphaeria nodorum	O
PHANO\|Gene_ORFName=SNOG_00237\|UniProtKB=Q0V6X7	Phaeosphaeria nodorum	O
SCHPO\|PomBase=SPAC6F12.09\|UniProtKB=O14227	Schizosaccharomyces pombe	O
SCHJY\|EnsemblGenome=SJAG_03356\|UniProtKB=B6K409	Schizosaccharomyces japonicus	O
CRYNJ\|EnsemblGenome=CNG01230\|UniProtKB=Q5KEA1	Cryptococcus neoformans	O
PUCGT\|EnsemblGenome=PGTG_17766\|UniProtKB=E3L5E1	Puccinia graminis	O
PUCGT\|EnsemblGenome=PGTG_20838\|UniProtKB=H6QPF7	Puccinia graminis	O
PUCGT\|EnsemblGenome=PGTG_02834\|UniProtKB=E3JWG8	Puccinia graminis	O
PUCGT\|EnsemblGenome=PGTG_05092\|UniProtKB=E3K6D6	Puccinia graminis	O
PUCGT\|EnsemblGenome=PGTG_09533\|UniProtKB=E3KHP5	Puccinia graminis	O
ENTH1\|EnsemblGenome=CL6EHI_139420\|UniProtKB=C4M6W7	Entamoeba histolytica	O
DICDI\|dictyBase=DDB_G0280963\|UniProtKB=Q54UI6	Dictyostelium discoideum	O
DICPU\|EnsemblGenome=DICPUDRAFT_149105\|UniProtKB=F0ZCV1	Dictyostelium purpureum	O
DICDI\|dictyBase=DDB_G0289659\|UniProtKB=Q54H25	Dictyostelium discoideum	O
DICDI\|dictyBase=DDB_G0291249\|UniProtKB=Q54EH7	Dictyostelium discoideum	O
DICPU\|EnsemblGenome=DICPUDRAFT_54684\|UniProtKB=F0ZI81	Dictyostelium purpureum	O
GIAIC\|EnsemblGenome=GL50803_102515\|UniProtKB=E2RTV4	Giardia intestinalis	O
PARTE\|EnsemblGenome=GSPATT00018564001\|UniProtKB=A0DMU3	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00006401001\|UniProtKB=Q3SE69	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00024768001\|UniProtKB=Q3SE67	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00036857001\|UniProtKB=A0CBA7	Paramecium tetraurelia	O
THAPS\|EnsemblGenome=THAPSDRAFT_22277\|UniProtKB=B8BZF0	Thalassiosira pseudonana	O
THAPS\|EnsemblGenome=THAPSDRAFT_5028\|UniProtKB=B8C1R8	Thalassiosira pseudonana	O
AMBTC\|EnsemblGenome=AMTR_s00088p00026960\|UniProtKB=W1NRA4	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_74G00740\|UniProtKB=A0A0K9NPQ0	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma10_g31290\|UniProtKB=A0A804L2F0	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_009219mg\|UniProtKB=K3Y4T1	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3006G111200\|UniProtKB=C5YA80	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb080370\|UniProtKB=Q19VG2	Zea mays	LDO
ORYSJ\|Gene_OrderedLocusName=LOC_Os04g39160\|UniProtKB=Q7XM31	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_1g33920v3\|UniProtKB=I1GWL1	Brachypodium distachyon	O
BRADI\|EnsemblGenome=BRADI_5g12757v3\|UniProtKB=I1IYL9	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.2HG0174030\|UniProtKB=A0A8I7B395	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS2D02G328100\|UniProtKB=A0A3B6DF38	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS4B02G231900\|UniProtKB=A0A3B6IVM3	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS4D02G186200\|UniProtKB=A0A3B6JHY3	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS4D02G233200\|UniProtKB=A0A3B6JJN5	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS2B02G347300\|UniProtKB=A0A3B6CAQ9	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS2A02G333900\|UniProtKB=A0A3B6B1A7	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS2B02G347100\|UniProtKB=A0A3B6C8A7	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS2D02G328300\|UniProtKB=A0A3B6DEH2	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS4A02G119800\|UniProtKB=A0A3B6HV39	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS2A02G334100\|UniProtKB=A0A3B6B0H6	Triticum aestivum	O
NELNU\|Gene_ORFName=HUJ06_009853\|UniProtKB=A0A1U8AVH2	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110790148\|UniProtKB=A0A9R0IK83	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr16g0730631\|UniProtKB=A0A251RWP5	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C400187090\|UniProtKB=A0A9R1VWW9	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a000463mg\|UniProtKB=A0A022RS23	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_10266\|UniProtKB=A0A2G3A1T0	Capsicum annuum	LDO
SOLLC\|EnsemblGenome=Solyc03g114140.3\|UniProtKB=A0A3Q7FQ94	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107815430\|UniProtKB=A0A1S4C5X6	Nicotiana tabacum	LDO
TOBAC\|Gene=LOC107773126\|UniProtKB=A0A1S3Y7C2	Nicotiana tabacum	O
VITVI\|Gene_OrderedLocusName=VIT_17s0000g07980\|UniProtKB=F6GSU3	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_K02861\|UniProtKB=A0A059A7H7	Eucalyptus grandis	LDO
BRANA\|EnsemblGenome=GSBRNA2T00068336001\|UniProtKB=A0A078JRB1	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra035249\|UniProtKB=M4F2F1	Brassica campestris	LDO
ARATH\|TAIR=locus=2136068\|UniProtKB=O82504	Arabidopsis thaliana	LDO
THECC\|EnsemblGenome=TCM_012022\|UniProtKB=A0A061FV06	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g001183mg\|UniProtKB=A0A067FQX3	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_015G073700v3\|UniProtKB=B9IEP4	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_14G068000\|UniProtKB=A0A251JA94	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_1511600\|UniProtKB=B9RB56	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_17G091500\|UniProtKB=I1MTJ2	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_05G035900\|UniProtKB=A0A0R0JXX8	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_4g106660\|UniProtKB=G7JNT8	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr02_03810\|UniProtKB=A0A2I4FJ22	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_1G005580\|UniProtKB=E9NWK9	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_5G176700\|UniProtKB=M5WGW0	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_126929\|UniProtKB=D8SX78	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_448382\|UniProtKB=D8T6W0	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_150191\|UniProtKB=D8RV28	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_235652\|UniProtKB=D8T053	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c24_15800\|UniProtKB=A0A7I4CK47	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0189s0015\|UniProtKB=A0A2R6W1C2	Marchantia polymorpha	O
MARPO\|EnsemblGenome=MARPO_0061s0115\|UniProtKB=A0A2R6WSP5	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_000630360\|UniProtKB=A0A1Y1HQC0	Klebsormidium nitens	O
KLENI\|Gene_ORFName=KFL_002820020\|UniProtKB=A0A1Y1IC39	Klebsormidium nitens	O