PANTHER Gene Information

Gene Symbol(s):

Os01g0549400

Organism:

Oryza sativa

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Gene Name:

DEAD-box ATP-dependent RNA helicase 40

Gene ID:

Os01g0549400

Protein ID:

Q5JKF2

Persistent Id:

PTN002776686

Alternate Ids:

RH40(Synonym)	AP004225(EMBL)
BAS72627(EMBL-CDS)	A0A0P0V3W2(AltAccession)
RH40_ORYSJ(UniProtKB-ID)	Os01g0549400(Ensembl)
3.6.4.13(EC)	143455968(GI)
4326190(GeneID)	XM_015765494(refSeq)
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PANTHER Classification

PANTHER Family:	ATP-DEPENDENT RNA HELICASE DBP3 (PTHR47958)
PANTHER Subfamily:	DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 (PTHR47958:SF191)
PANTHER GO-slim Molecular Function:	helicase activity mRNA binding catalytic activity, acting on RNA
PANTHER GO-slim Biological Process:
PANTHER GO-slim Cellular Component:
PANTHER protein class:	RNA helicase

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	ATP hydrolysis activity, helicase activity, cohesin loader activity, nucleic acid binding, ATP binding, DNA clamp loader activity, ATP-dependent H2AZ histone chaperone activity, RNA binding, RNA helicase activity, mRNA binding, ATP-dependent H3-H4 histone complex chaperone activity, chromatin extrusion motor activity, hydrolase activity
GO BP Complete:	chromatin remodeling, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, ribosome biogenesis, chromatin looping, rRNA processing
GO CC Complete:	nucleus

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
XENLA\|Gene=ddx28.L\|UniProtKB=A0A1L8GKB9	Xenopus laevis	O
BRAFL\|Gene=LOC118427708\|UniProtKB=A0A9J7N8A5	Branchiostoma floridae	O
HUMAN\|HGNC=20083\|UniProtKB=Q86TM3	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000028313.3\|UniProtKB=H2R4S8	Pan troglodytes	O
MACMU\|Ensembl=ENSMMUG00000022142.4\|UniProtKB=A0A5F7ZHZ6	Macaca mulatta	O
BOVIN\|Ensembl=ENSBTAG00000046635.2\|UniProtKB=G3MYF0	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000012169.5\|UniProtKB=F1SQ03	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000043882.1\|UniProtKB=A0A9L0R2W3	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000049112.1\|UniProtKB=A0A5F5Y457	Felis catus	O
HUMAN\|HGNC=18677\|UniProtKB=Q9NXZ2	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000018344.6\|UniProtKB=H2R0S2	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000016092.3\|UniProtKB=G3S041	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000019599.4\|UniProtKB=F7B8M1	Macaca mulatta	O
MOUSE\|MGI=MGI=3642857\|UniProtKB=D3Z6P9	Mus musculus	O
RAT\|RGD=1586947\|UniProtKB=M0R9C6	Rattus norvegicus	O
BOVIN\|Ensembl=ENSBTAG00000021814.6\|UniProtKB=E1BII7	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000004287.5\|UniProtKB=F1S0I6	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000017971.3\|UniProtKB=F6PHM7	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000031631.4\|UniProtKB=M3WZA4	Felis catus	O
CANLF\|Ensembl=ENSCAFG00845009038.1\|UniProtKB=A0A8I3RUZ1	Canis lupus familiaris	O
CANLF\|Ensembl=ENSCAFG00845011968.1\|UniProtKB=A0A8I3NFC3	Canis lupus familiaris	O
CANLF\|Ensembl=ENSCAFG00845009038.1\|UniProtKB=A0A8I3RUZ1	Canis lupus familiaris	O
MONDO\|Ensembl=ENSMODG00000014335.3\|UniProtKB=F6UM96	Monodelphis domestica	O
MONDO\|Ensembl=ENSMODG00000018546.3\|UniProtKB=F7GCW4	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000006467.3\|UniProtKB=F6R3V1	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010001550.1\|UniProtKB=A0A8V0X600	Gallus gallus	O
ANOCA\|Ensembl=ENSACAG00000004387.4\|UniProtKB=H9G903	Anolis carolinensis	O
XENLA\|Gene=ddx43.L\|UniProtKB=A0A8J1KNZ3	Xenopus laevis	O
XENTR\|Xenbase=XB-GENE-988016\|UniProtKB=Q0P4V5	Xenopus tropicalis	O
ORYLA\|Ensembl=ENSORLG00000002267.2\|UniProtKB=H2LAA7	Oryzias latipes	O
DANRE\|ZFIN=ZDB-GENE-080204-77\|UniProtKB=B8A609	Danio rerio	O
LEPOC\|Ensembl=ENSLOCG00000016170.1\|UniProtKB=W5NH17	lepisosteus oculatus	O
BRAFL\|Gene=LOC118409694\|UniProtKB=A0A9J7KMN8	Branchiostoma floridae	O
STRPU\|EnsemblGenome=LOC588613\|UniProtKB=A0A7M7NQU3	Strongylocentrotus purpuratus	O
STRPU\|EnsemblGenome=LOC754745\|UniProtKB=A0A7M7NPH4	Strongylocentrotus purpuratus	O
CAEEL\|WormBase=WBGene00013214\|UniProtKB=Q9XVZ6	Caenorhabditis elegans	O
CAEBR\|WormBase=WBGene00039604\|UniProtKB=A8XYB6	Caenorhabditis briggsae	O
DROME\|FlyBase=FBgn0037549\|UniProtKB=Q7K4L8	Drosophila melanogaster	O
ANOGA\|EnsemblGenome=AGAP004351\|UniProtKB=A7UT24	Anopheles gambiae	O
TRICA\|EnsemblGenome=TC033693\|UniProtKB=A0A139WEA2	Tribolium castaneum	O
DAPPU\|EnsemblGenome=DAPPUDRAFT_61214\|UniProtKB=E9HCK5	Daphnia pulex	O
IXOSC\|EnsemblGenome=ISCW020807\|UniProtKB=B7PXT2	Ixodes scapularis	O
IXOSC\|EnsemblGenome=ISCW022725\|UniProtKB=B7QDY6	Ixodes scapularis	O
HELRO\|EnsemblGenome=HelroG90549\|UniProtKB=T1G7T0	helobdella robusta	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g21616\|UniProtKB=A7S9G4	Nematostella vectensis	O
TRIAD\|EnsemblGenome=TriadG59127\|UniProtKB=B3S4L3	Trichoplax adhaerens	O
TRIAD\|EnsemblGenome=TriadG55837\|UniProtKB=B3RW01	Trichoplax adhaerens	O
ENTH1\|EnsemblGenome=CL6EHI_082600\|UniProtKB=C4M6A9	Entamoeba histolytica	O
ENTH1\|EnsemblGenome=CL6EHI_096390\|UniProtKB=C4LWF2	Entamoeba histolytica	O
DICDI\|dictyBase=DDB_G0292010\|UniProtKB=Q54DV7	Dictyostelium discoideum	O
DICPU\|EnsemblGenome=DICPUDRAFT_149527\|UniProtKB=F0ZDZ5	Dictyostelium purpureum	O
DICDI\|dictyBase=DDB_G0293036\|UniProtKB=Q54CD6	Dictyostelium discoideum	O
DICPU\|EnsemblGenome=DICPUDRAFT_38798\|UniProtKB=F0ZV75	Dictyostelium purpureum	O
DICDI\|dictyBase=DDB_G0281925\|UniProtKB=Q54T87	Dictyostelium discoideum	O
DICPU\|EnsemblGenome=DICPUDRAFT_47799\|UniProtKB=F0ZLD7	Dictyostelium purpureum	O
LEIMA\|EnsemblGenome=LMJF_28_2080\|UniProtKB=Q4Q858	Leishmania major	O
TRYB2\|Gene_ORFName=Tb11.01.0610\|UniProtKB=Q384E1	Trypanosoma brucei	O
LEIMA\|EnsemblGenome=LMJF_10_0140\|UniProtKB=Q4QHK6	Leishmania major	O
TRYB2\|Gene_ORFName=Tb927.8.3830\|UniProtKB=Q581A3	Trypanosoma brucei	O
LEIMA\|EnsemblGenome=LMJF_36_2130\|UniProtKB=Q4Q1K8	Leishmania major	O
TRYB2\|Gene_ORFName=Tb10.70.0140\|UniProtKB=Q38AU3	Trypanosoma brucei	O
LEIMA\|EnsemblGenome=LMJF_08_0080\|UniProtKB=Q4QIG1	Leishmania major	O
TRYB2\|Gene_ORFName=Tb927.5.3600\|UniProtKB=Q57UA6	Trypanosoma brucei	O
LEIMA\|EnsemblGenome=LMJF_07_0340\|UniProtKB=Q4QIQ9	Leishmania major	O
TRYB2\|Gene_ORFName=Tb927.8.1510\|UniProtKB=Q580H2	Trypanosoma brucei	O
GIAIC\|Gene_ORFName=GL50803_0017497\|UniProtKB=A0A644F443	Giardia intestinalis	O
TRIV3\|Gene_ORFName=TVAG_081030\|UniProtKB=A2EPC6	Trichomonas vaginalis	O
PLAF7\|EnsemblGenome=PF3D7_0807100\|UniProtKB=Q8IAR1	Plasmodium falciparum	O
PLAF7\|EnsemblGenome=PF3D7_0504200\|UniProtKB=Q8I459	Plasmodium falciparum	O
PLAF7\|EnsemblGenome=PF3D7_0705600\|UniProtKB=C0H4K7	Plasmodium falciparum	O
PLAF7\|EnsemblGenome=PF3D7_1313400\|UniProtKB=Q8IEH9	Plasmodium falciparum	O
PLAF7\|EnsemblGenome=PF3D7_0321600\|UniProtKB=O97290	Plasmodium falciparum	O
PLAF7\|EnsemblGenome=PF3D7_1227100\|UniProtKB=Q8I5E7	Plasmodium falciparum	O
PARTE\|EnsemblGenome=GSPATT00015767001\|UniProtKB=A0DCZ1	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00008460001\|UniProtKB=A0CMG4	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00027800001\|UniProtKB=A0BE02	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00012963001\|UniProtKB=A0D361	Paramecium tetraurelia	O
THAPS\|EnsemblGenome=THAPSDRAFT_31037\|UniProtKB=B8BR52	Thalassiosira pseudonana	O
CHLRE\|EnsemblGenome=CHLRE_06g291150v5\|UniProtKB=A0A2K3DQE6	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_12g540200v5\|UniProtKB=A0A2K3D6Z4	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_01g021600v5\|UniProtKB=A0A2K3E652	Chlamydomonas reinhardtii	O
AMBTC\|EnsemblGenome=AMTR_s00096p00079870\|UniProtKB=W1P5X5	Amborella trichopoda	O
ZOSMR\|Gene_ORFName=ZOSMA_252G00120\|UniProtKB=A0A0K9PG21	Zostera marina	O
SETIT\|EnsemblGenome=SETIT_000345mg\|UniProtKB=K3XEM8	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3003G187400\|UniProtKB=A0A1B6Q477	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb162370\|UniProtKB=A0A1D6NMP6	Zea mays	O
MAIZE\|EnsemblGenome=Zm00001eb356610\|UniProtKB=A0A804QPZ5	Zea mays	LDO
BRADI\|EnsemblGenome=BRADI_2g40760v3\|UniProtKB=I1HNG4	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.3HG0263860\|UniProtKB=A0A8I6X192	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS3B02G230800\|UniProtKB=A0A3B6FLN0	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS3A02G194200\|UniProtKB=A0A3B6EEQ6	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS3D02G202500\|UniProtKB=A0A3B6GVT6	Triticum aestivum	LDO
NELNU\|Gene_ORFName=HUJ06_009755\|UniProtKB=A0A1U7ZJK4	Nelumbo nucifera	O
CAPAN\|EnsemblGenome=T459_06849\|UniProtKB=A0A2G3ABW2	Capsicum annuum	O
SOLTU\|EnsemblGenome=PGSC0003DMG401000517\|UniProtKB=M0ZID7	Solanum tuberosum	O
SOLLC\|EnsemblGenome=Solyc02g086660.3\|UniProtKB=A0A3Q7F9L3	Solanum lycopersicum	O
TOBAC\|Gene=LOC107763320\|UniProtKB=A0A1S3XBH3	Nicotiana tabacum	O
TOBAC\|Gene=LOC107806607\|UniProtKB=A0A1S4BBT4	Nicotiana tabacum	O
GOSHI\|Gene=LOC107926050\|UniProtKB=A0A1U8LG01	Gossypium hirsutum	O
SPIOL\|Gene=LOC110803722\|UniProtKB=A0A9R0KBQ3	Spinacia oleracea	O
HELAN\|EnsemblGenome=HanXRQr2_Chr14g0654321\|UniProtKB=A0A251SJS6	Helianthus annuus	O
LACSA\|Gene_ORFName=LSAT_V11C200083880\|UniProtKB=A0A9R1W6Y3	Lactuca sativa	O
HELAN\|EnsemblGenome=HanXRQr2_Chr09g0386261\|UniProtKB=A0A251TUZ5	Helianthus annuus	O
HELAN\|Gene_ORFName=HanXRQr2_Chr15g0709741\|UniProtKB=A0A9K3E348	Helianthus annuus	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a002636mg\|UniProtKB=A0A022R424	Erythranthe guttata	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a003026mg\|UniProtKB=A0A022S0K7	Erythranthe guttata	O
CAPAN\|EnsemblGenome=T459_11775\|UniProtKB=A0A2G2ZMW5	Capsicum annuum	O
SOLTU\|EnsemblGenome=PGSC0003DMG400031391\|UniProtKB=M1D3R2	Solanum tuberosum	O
SOLLC\|EnsemblGenome=Solyc12g035130.2\|UniProtKB=A0A3Q7J7X3	Solanum lycopersicum	O
TOBAC\|Gene=LOC107823507\|UniProtKB=A0A1S4CWY3	Nicotiana tabacum	O
TOBAC\|Gene=LOC107769931\|UniProtKB=A0A1S3XY80	Nicotiana tabacum	O
VITVI\|EnsemblGenome=Vitvi14g01741\|UniProtKB=F6HUY4	Vitis vinifera	O
BRANA\|Gene_ORFName=GSBRNA2T00041297001\|UniProtKB=A0A078GT40	Brassica napus	O
BRACM\|EnsemblGenome=Bra001004\|UniProtKB=M4C9X5	Brassica campestris	O
BRACM\|EnsemblGenome=Bra040699\|UniProtKB=M4FHX0	Brassica campestris	O
ARATH\|TAIR=locus=2084178\|UniProtKB=Q8H136	Arabidopsis thaliana	O
BRACM\|EnsemblGenome=Bra023478\|UniProtKB=M4E3X5	Brassica campestris	O
ARATH\|TAIR=locus=2222617\|UniProtKB=Q9LYJ9	Arabidopsis thaliana	O
GOSHI\|Gene=LOC107926488\|UniProtKB=A0A1U8LE10	Gossypium hirsutum	O
GOSHI\|Gene=LOC107892276\|UniProtKB=A0A1U8I3I6	Gossypium hirsutum	O
GOSHI\|Gene=LOC107888678\|UniProtKB=A0A1U8HQM7	Gossypium hirsutum	O
THECC\|EnsemblGenome=TCM_016908\|UniProtKB=A0A061EJG4	Theobroma cacao	O
CITSI\|Gene_ORFName=CISIN_1g005313mg\|UniProtKB=A0A067FIZ1	Citrus sinensis	O
POPTR\|EnsemblGenome=POPTR_017G071400v3\|UniProtKB=A0A2K1X4G3	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_001G347100v3\|UniProtKB=A0A2K2C8C5	Populus trichocarpa	O
MANES\|EnsemblGenome=MANES_15G149200\|UniProtKB=A0A2C9UH63	Manihot esculenta	O
RICCO\|Gene_ORFName=RCOM_1063350\|UniProtKB=B9S627	Ricinus communis	O
SOYBN\|EnsemblGenome=GLYMA_19G006000\|UniProtKB=A0A0R4J5Z2	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_05G005500\|UniProtKB=I1K1I4	Glycine max	O
MEDTR\|EnsemblGenome=MTR_6g005550\|UniProtKB=G7KHJ1	Medicago truncatula	O
JUGRE\|EnsemblGenome=Jr10_03370\|UniProtKB=A0A2I4FAR8	Juglans regia	O
JUGRE\|EnsemblGenome=Jr01_04710\|UniProtKB=A0A6P9F0C5	Juglans regia	O
JUGRE\|EnsemblGenome=Jr01_04690\|UniProtKB=A0A6P9F0B9	Juglans regia	O
JUGRE\|EnsemblGenome=Jr01_04700\|UniProtKB=A0A2I4EUH5	Juglans regia	O
CUCSA\|EnsemblGenome=Csa_3G838660\|UniProtKB=A0A0A0LG68	Cucumis sativus	O
PRUPE\|EnsemblGenome=PRUPE_3G287500\|UniProtKB=M5WYA7	Prunus persica	O
SELML\|EnsemblGenome=SELMODRAFT_441099\|UniProtKB=D8RGG6	Selaginella moellendorffii	O
PHYPA\|EnsemblGenome=Pp3c8_1190\|UniProtKB=A0A7I4EB43	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c11_24910\|UniProtKB=A0A2K1JW74	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c7_8530\|UniProtKB=A0A2K1KB05	Physcomitrella patens	O
MARPO\|EnsemblGenome=MARPO_0059s0052\|UniProtKB=A0A2R6WTG3	Marchantia polymorpha	O
MARPO\|EnsemblGenome=MARPO_0002s0338\|UniProtKB=A0A2R6XUY7	Marchantia polymorpha	O
MARPO\|EnsemblGenome=MARPO_0020s0052\|UniProtKB=A0A2R6XE55	Marchantia polymorpha	O
KLENI\|Gene_ORFName=KFL_001890140\|UniProtKB=A0A1Y1I0I2	Klebsormidium nitens	O
KLENI\|Gene_ORFName=KFL_002590020\|UniProtKB=A0A1Y1I4K7	Klebsormidium nitens	O
NITMS\|EnsemblGenome=Nmar_1182\|UniProtKB=A9A5S3	Nitrosopumilus maritimus	O
SACS2\|EnsemblGenome=SSO2036\|UniProtKB=Q97WT0	Sulfolobus solfataricus	O
SACS2\|EnsemblGenome=SSO1889\|UniProtKB=Q97X64	Sulfolobus solfataricus	O