PANTHER Gene Information

Gene Symbol(s):

PHYPA_018255

Organism:

Physcomitrella patens

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Gene Name:

DNA-directed RNA polymerase RpoA_D_Rpb3-type domain-containing protein

Gene ID:

Pp3c14_9440

Protein ID:

A9SHD1

Persistent Id:

PTN000927769

Alternate Ids:

168026615(GI)	XM_001765775(refSeq)
ABEU02000014(EMBL)	A9SHD1_PHYPA(UniProtKB-ID)
A9SHD1(Synonym)	PNR40852(EMBL-CDS)
Pp3c14_9440(Ensembl)
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PANTHER Classification

PANTHER Family:	DNA-DIRECTED RNA POLYMERASE (PTHR11800)
PANTHER Subfamily:	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 (PTHR11800:SF2)
PANTHER GO-slim Molecular Function:	DNA-directed 5'-3' RNA polymerase activity
PANTHER GO-slim Biological Process:
PANTHER GO-slim Cellular Component:
PANTHER protein class:	DNA-directed RNA polymerase

Pathway Categories:

Transcription regulation by bZIP transcription factor

RNA Polymerase II

General transcription regulation

RNA Polymerase II

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	DNA binding, RNA polymerase II activity, DNA-directed 5'-3' RNA polymerase activity, protein dimerization activity
GO BP Complete:	DNA-templated transcription, transcription by RNA polymerase II
GO CC Complete:	DNA-directed RNA polymerase complex, RNA polymerase II, core complex

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=9189\|UniProtKB=P19387	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000008157.4\|UniProtKB=H2QB71	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000012415.3\|UniProtKB=G3RTN0	Gorilla gorilla gorilla	LDO
MOUSE\|MGI=MGI=109299\|UniProtKB=P97760	Mus musculus	LDO
RAT\|RGD=1306935\|UniProtKB=Q5EB90	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000001856\|UniProtKB=Q3T0Q3	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00005035495.1\|UniProtKB=A0A8D0NYY2	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000015818.4\|UniProtKB=A0A9L0SD09	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000034622.3\|UniProtKB=A0A2I2UWP3	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845003162.1\|UniProtKB=A0A8I3MS03	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000013540.3\|UniProtKB=F7CLY1	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000039689.1\|UniProtKB=A0A6I8P620	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010022241.1\|UniProtKB=E1BV97	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000007514.3\|UniProtKB=H9GCS7	Anolis carolinensis	LDO
XENLA\|Gene=polr2c.S\|UniProtKB=Q6IRR3	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-998258\|UniProtKB=Q6P7Y7	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000015108.2\|UniProtKB=H2MJT3	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-030131-6609\|UniProtKB=Q7ZV11	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000003215.1\|UniProtKB=W5M5Z7	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000021895.1\|UniProtKB=H2XZ54	Ciona intestinalis	LDO
CIOIN\|Ensembl=ENSCING00000009812.3\|UniProtKB=F6Y5Q3	Ciona intestinalis	LDO
BRAFL\|Gene_ORFName=BRAFLDRAFT_277672\|UniProtKB=C3Z918	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC575987\|UniProtKB=A0A7M7N5G7	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00007971\|UniProtKB=Q93338	Caenorhabditis elegans	LDO
CAEBR\|Gene_ORFName=CBG12350\|UniProtKB=A8XFM5	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00277508\|UniProtKB=A0A2A6CTM8	Pristionchus pacificus	O
PRIPA\|EnsemblGenome=WBGene00277923\|UniProtKB=A0A2A6B3W2	Pristionchus pacificus	LDO
PRIPA\|EnsemblGenome=WBGene00273614\|UniProtKB=A0A2A6B625	Pristionchus pacificus	O
PRIPA\|EnsemblGenome=WBGene00274013\|UniProtKB=A0A2A6BN26	Pristionchus pacificus	O
PRIPA\|EnsemblGenome=WBGene00276001\|UniProtKB=A0A2A6BB02	Pristionchus pacificus	O
PRIPA\|EnsemblGenome=WBGene00118097\|UniProtKB=H3G1T5	Pristionchus pacificus	O
PRIPA\|EnsemblGenome=WBGene00096041\|UniProtKB=A0A2A6BUL5	Pristionchus pacificus	LDO
PRIPA\|EnsemblGenome=WBGene00284008\|UniProtKB=A0A2A6CKY3	Pristionchus pacificus	O
DROME\|FlyBase=FBgn0026373\|UniProtKB=O97183	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP010321\|UniProtKB=Q7Q2H6	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC010438\|UniProtKB=D6WKM1	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_313021\|UniProtKB=E9G1A5	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW023353\|UniProtKB=B7QL55	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG85938\|UniProtKB=T1G647	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG86044\|UniProtKB=T1G664	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g190101\|UniProtKB=A7SI64	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG24132\|UniProtKB=B3RV95	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_31337\|UniProtKB=A9URC4	Monosiga brevicollis	LDO
YEAST\|SGD=S000001283\|UniProtKB=P16370	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_ADL120C\|UniProtKB=Q75B05	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000186561\|UniProtKB=Q5A462	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_F05566g\|UniProtKB=Q6C2S4	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_06252\|UniProtKB=Q5AZM8	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_2G13090\|UniProtKB=Q4X0L2	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU01515\|UniProtKB=Q1K5K1	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_05346\|UniProtKB=A7EJ53	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_07533\|UniProtKB=Q0UL31	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPCC1442.10c\|UniProtKB=P37382	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_02506\|UniProtKB=B6K2N9	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CNE05120\|UniProtKB=Q5KG24	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_03550\|UniProtKB=A0A0D1CPC3	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_00006\|UniProtKB=E3JPW7	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_20338\|UniProtKB=F4P8K9	Batrachochytrium dendrobatidis	LDO
ENTH1\|EnsemblGenome=CL6EHI_178010\|UniProtKB=C4M554	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0292244\|UniProtKB=Q54DH7	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_155135\|UniProtKB=F0ZT58	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_29_0140\|UniProtKB=E9ADL6	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb927.3.5500\|UniProtKB=Q580S5	Trypanosoma brucei	LDO
GIAIC\|EnsemblGenome=GL50803_7474\|UniProtKB=E2RTY7	Giardia intestinalis	LDO
TRIV3\|Gene_ORFName=TVAG_328410\|UniProtKB=A2F4R6	Trichomonas vaginalis	LDO
PLAF7\|EnsemblGenome=PF3D7_0923000\|UniProtKB=Q8I2S6	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00018540001\|UniProtKB=A0DMR9	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00038663001\|UniProtKB=A0CLS1	Paramecium tetraurelia	LDO
PARTE\|EnsemblGenome=GSPATT00017176001\|UniProtKB=A0DID7	Paramecium tetraurelia	LDO
THAPS\|EnsemblGenome=THAPSDRAFT_16440\|UniProtKB=B8BWN8	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3GMV0_PHYRM\|UniProtKB=H3GMV0	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_10g419750v5\|UniProtKB=A0A2K3D929	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00038p00194050\|UniProtKB=U5CZT5	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_92G00660\|UniProtKB=A0A0K9NJB4	Zostera marina	LDO
ZOSMR\|Gene_ORFName=ZOSMA_246G00060\|UniProtKB=A0A0K9PJ07	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma01_g19980\|UniProtKB=A0A804HW80	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_033113mg\|UniProtKB=K4A2L4	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3002G145000\|UniProtKB=C5X7D7	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb095630\|UniProtKB=A0A804MLM8	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os09g0110400\|UniProtKB=Q6YX88	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_4g08350v3\|UniProtKB=I1IIS1	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.7HG0745350\|UniProtKB=A0A8I7BFN5	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS7A02G519700\|UniProtKB=A0A3B6RN84	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS7B02G435800\|UniProtKB=A0A3B6SKK8	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS7D02G509400\|UniProtKB=A0A3B6TM81	Triticum aestivum	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.5HG0467880\|UniProtKB=A0A8I6YQZ8	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS5A02G160900\|UniProtKB=A0A3B6KGP8	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS5B02G158300\|UniProtKB=A0A3B6LK99	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS5D02G165800\|UniProtKB=A0A3B6MPS2	Triticum aestivum	LDO
NELNU\|Gene=LOC104610226\|UniProtKB=A0A1U8BEB7	Nelumbo nucifera	LDO
NELNU\|Gene_ORFName=HUJ06_008128\|UniProtKB=A0A1U7Z3L1	Nelumbo nucifera	O
SPIOL\|Gene=LOC110791126\|UniProtKB=A0A9R0JYB4	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr03g0106411\|UniProtKB=A0A251V6S4	Helianthus annuus	O
HELAN\|EnsemblGenome=HanXRQr2_Chr16g0775601\|UniProtKB=A0A251S3C9	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C900500580\|UniProtKB=A0A9R1UEN1	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a012844mg\|UniProtKB=A0A022RRR1	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_30880\|UniProtKB=A0A2G2Y9L7	Capsicum annuum	O
CAPAN\|EnsemblGenome=T459_26920\|UniProtKB=A0A1U8F3S8	Capsicum annuum	LDO
SOLLC\|EnsemblGenome=Solyc05g010300.3\|UniProtKB=A0A3Q7H7H6	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107832026\|UniProtKB=A0A1S4DQA5	Nicotiana tabacum	LDO
TOBAC\|Gene=LOC107789704\|UniProtKB=A0A1S3ZRY0	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi03g00543\|UniProtKB=F6I5Z0	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_G01370\|UniProtKB=A0A059BBW8	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=DARMORV10_C09P12730.1\|UniProtKB=A0A078JAD9	Brassica napus	O
BRANA\|Gene_ORFName=GSBRNA2T00063714001\|UniProtKB=A0A078HH68	Brassica napus	O
BRACM\|EnsemblGenome=Bra039839\|UniProtKB=M4FFG5	Brassica campestris	O
BRANA\|Gene_ORFName=DARMORV10_A07P05280.1\|UniProtKB=A0A078HFV5	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra015218\|UniProtKB=A0A397YHX7	Brassica campestris	LDO
ARATH\|TAIR=locus=2047198\|UniProtKB=Q39212	Arabidopsis thaliana	O
ARATH\|TAIR=locus=2047168\|UniProtKB=Q39211	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107922611\|UniProtKB=A0A1U8L0L3	Gossypium hirsutum	O
GOSHI\|Gene=LOC107944882\|UniProtKB=A0A1U8N501	Gossypium hirsutum	O
GOSHI\|Gene=LOC107956782\|UniProtKB=A0A1U8PBZ9	Gossypium hirsutum	O
GOSHI\|Gene=LOC107945141\|UniProtKB=A0A1U8N9N3	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_007121\|UniProtKB=A0A061E7U0	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g020936mg\|UniProtKB=A0A067F124	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_009G097600v3\|UniProtKB=A0A2K1Z5I7	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_07G076600\|UniProtKB=A0A2C9VLU9	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0811900\|UniProtKB=B9RYB6	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_20G019200\|UniProtKB=I1NDC0	Glycine max	LDO
SOYBN\|EnsemblGenome=GLYMA_07G220900\|UniProtKB=A0A0R4J3R4	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_4g084150\|UniProtKB=Q2MGQ5	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr16_21950\|UniProtKB=A0A2I4H548	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_2G093850\|UniProtKB=A0A0A0LHS1	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_8G132400\|UniProtKB=M5VY08	Prunus persica	O
PRUPE\|EnsemblGenome=PRUPE_8G132000\|UniProtKB=M5W886	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_75337\|UniProtKB=D8QNS1	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_180179\|UniProtKB=D8SJA3	Selaginella moellendorffii	LDO
MARPO\|EnsemblGenome=MARPO_0027s0025\|UniProtKB=A0A2R6X9Y6	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_003190150\|UniProtKB=A0A1Y1I7G1	Klebsormidium nitens	LDO
NITMS\|EnsemblGenome=Nmar_0428\|UniProtKB=A9A5C5	Nitrosopumilus maritimus	LDO
KORCO\|EnsemblGenome=Kcr_1582\|UniProtKB=B1L798	Korarchaeum cryptofilum	LDO
SACS2\|EnsemblGenome=SSO0071\|UniProtKB=P95989	Sulfolobus solfataricus	LDO
PYRAE\|EnsemblGenome=PAE0671\|UniProtKB=Q8ZYQ3	Pyrobaculum aerophilum	LDO
METAC\|Gene_OrderedLocusName=MA_1111\|UniProtKB=P0CG28	Methanosarcina acetivorans	LDO
HALSA\|EnsemblGenome=VNG_1136G\|UniProtKB=Q9HQJ4	Halobacterium salinarum	LDO
THEKO\|EnsemblGenome=TK1503\|UniProtKB=Q5JJF4	Thermococcus kodakaraensis	LDO