PANTHER Gene Information

Gene Symbol(s):

PHYPA_004919

Organism:

Physcomitrella patens

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Tree

Gene Name:

Sm domain-containing protein

Gene ID:

Pp3c3_24850

Protein ID:

A0A2K1KVV5

Persistent Id:

PTN004186184

Alternate Ids:

Pp3c3_24850V3(Ensembl_TRS)	A0A2K1KVV5(Synonym)
PNR57928(EMBL-CDS)	ABEU02000003(EMBL)
A0A2K1KVV5_PHYPA(UniProtKB-ID)	Pp3c3_24900(Ensembl)
PAC:32940179.CDS(Ensembl_PRO)
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PANTHER Classification

PANTHER Family:	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N (PTHR10701)
PANTHER Subfamily:	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B (PTHR10701:SF0)
PANTHER GO-slim Molecular Function:	ribonucleoprotein complex binding
PANTHER GO-slim Biological Process:	mRNA splicing, via spliceosome
PANTHER GO-slim Cellular Component:	catalytic step 2 spliceosome U2 snRNP U5 snRNP U4/U6 x U5 tri-snRNP complex U2-type prespliceosome U1 snRNP U4 snRNP cytoplasm
PANTHER protein class:	RNA splicing factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	RNA binding, snRNP binding
GO BP Complete:	mRNA splicing, via spliceosome
GO CC Complete:	nucleus, intracellular organelle, catalytic step 2 spliceosome, cytoplasm, U4/U6 x U5 tri-snRNP complex, U5 snRNP, U2-type prespliceosome, U2 snRNP, ribonucleoprotein complex, U1 snRNP, U4 snRNP

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
PANTR\|Ensembl=ENSPTRG00000044503.1\|UniProtKB=A0A2I3TRU0	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000040402.1\|UniProtKB=G3RJ64	Gorilla gorilla gorilla	O
PANTR\|Ensembl=ENSPTRG00000046808.1\|UniProtKB=A0A2I3TJD7	Pan troglodytes	O
MACMU\|Ensembl=ENSMMUG00000059688.1\|UniProtKB=A0A5F8ABQ2	Macaca mulatta	O
CANLF\|Ensembl=ENSCAFG00845016472.1\|UniProtKB=A0A8I3NPH2	Canis lupus familiaris	O
CHICK\|Ensembl=ENSGALG00010016207.1\|UniProtKB=A0A8V0YUS2	Gallus gallus	O
ORYLA\|Ensembl=ENSORLG00000009362.2\|UniProtKB=H2M018	Oryzias latipes	O
HUMAN\|HGNC=11164\|UniProtKB=P63162	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000006826.7\|UniProtKB=H2Q917	Pan troglodytes	LDO
MACMU\|Ensembl=ENSMMUG00000023139.4\|UniProtKB=F7FI72	Macaca mulatta	LDO
MOUSE\|MGI=MGI=98347\|UniProtKB=P63163	Mus musculus	LDO
RAT\|RGD=1592111\|UniProtKB=A0A8I5ZUK1	Rattus norvegicus	O
RAT\|RGD=621306\|UniProtKB=P63164	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000008251\|UniProtKB=Q17QN3	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00005041392.1\|UniProtKB=A0A4X1USC1	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000018148.3\|UniProtKB=F7CI38	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000006395.6\|UniProtKB=A0A2I2UJA4	Felis catus	O
FELCA\|Ensembl=ENSFCAG00000022298.4\|UniProtKB=M3WVH9	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845008586.1\|UniProtKB=A0A8I3N8H4	Canis lupus familiaris	O
CANLF\|Ensembl=ENSCAFG00845019483.1\|UniProtKB=A0A8I3P9U5	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000013926.3\|UniProtKB=F6SUZ7	Monodelphis domestica	LDO
PANTR\|Ensembl=ENSPTRG00000052400.1\|UniProtKB=A0A2I3T5W3	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000024469.2\|UniProtKB=A0A2I2YRJ0	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000060322.1\|UniProtKB=A0A5F7ZYR7	Macaca mulatta	O
HUMAN\|HGNC=11153\|UniProtKB=P14678	Homo sapiens	LDO
GORGO\|Ensembl=ENSGGOG00000016138.3\|UniProtKB=G3S6A6	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000010050.4\|UniProtKB=A0A1D5Q2L1	Macaca mulatta	LDO
MOUSE\|MGI=MGI=98342\|UniProtKB=P27048	Mus musculus	LDO
RAT\|RGD=1563375\|UniProtKB=A0A8I5ZU06	Rattus norvegicus	O
RAT\|RGD=621301\|UniProtKB=P17136	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000024548.5\|UniProtKB=A0A3Q1M973	Bos taurus	O
BOVIN\|Ensembl=ENSBTAG00000001038.5\|UniProtKB=G1K134	Bos taurus	LDO
BOVIN\|Gene=SNRPB\|UniProtKB=Q58DW4	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000040614.2\|UniProtKB=A0A287BAW7	Sus scrofa	O
PIG\|Ensembl=ENSSSCG00000040857.3\|UniProtKB=A0A287AG39	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000011944.4\|UniProtKB=F6VEH6	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000041049.2\|UniProtKB=A0A337SEH3	Felis catus	O
FELCA\|Ensembl=ENSFCAG00000034090.3\|UniProtKB=A0A2I2V053	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845030870.1\|UniProtKB=A0A8I3Q5I9	Canis lupus familiaris	O
CANLF\|Ensembl=ENSCAFG00845016446.1\|UniProtKB=A0A8I3NQJ9	Canis lupus familiaris	O
CANLF\|Ensembl=ENSCAFG00845016780.1\|UniProtKB=A0A8I3P5Y9	Canis lupus familiaris	LDO
MONDO\|Gene=SNRPB\|UniProtKB=Q9TU66	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000041709.1\|UniProtKB=A0A6I8PK85	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010016197\|UniProtKB=Q9PV94	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000045028.1\|UniProtKB=A0A803THR3	Anolis carolinensis	LDO
XENLA\|Gene=LOC108708738\|UniProtKB=A0A8J1MAK6	Xenopus laevis	O
XENLA\|Gene=snrpb.L\|UniProtKB=Q2VPN2	Xenopus laevis	O
XENLA\|Gene=snrpb.S\|UniProtKB=Q0IHK1	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-5877283\|UniProtKB=Q6NX14	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000021862.1\|UniProtKB=H2M017	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-040426-1819\|UniProtKB=Q9I9E5	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000002687.1\|UniProtKB=W5M447	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000016042.2\|UniProtKB=F6W6Z3	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118418531\|UniProtKB=A0A9J7LCM8	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC115917952\|UniProtKB=A0A7M7REW6	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00004915\|UniProtKB=P91918	Caenorhabditis elegans	LDO
CAEBR\|WormBase=WBGene00039366\|UniProtKB=A8XXM6	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00304470\|UniProtKB=A0A8R1V4G0	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0262601\|UniProtKB=Q05856	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP005523\|UniProtKB=Q7Q740	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC030631\|UniProtKB=D6WLA8	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_305959\|UniProtKB=E9GTZ6	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW007743\|UniProtKB=B7PRX9	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG187181\|UniProtKB=T1FP75	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g176237\|UniProtKB=A7T1G2	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG37531\|UniProtKB=B3RV75	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_3442\|UniProtKB=A9UW20	Monosiga brevicollis	LDO
YEAST\|SGD=S000000831\|UniProtKB=P40018	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_AER432C\|UniProtKB=Q755T6	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000198927\|UniProtKB=A0A1D8PTI0	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_D14102g\|UniProtKB=Q6C948	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_10561\|UniProtKB=C8V8F9	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_4G07740\|UniProtKB=Q4WP21	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU02508\|UniProtKB=Q7SHV3	Neurospora crassa	LDO
SCLS1\|Gene_ORFName=SS1G_12875\|UniProtKB=A7F5J7	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_03555\|UniProtKB=Q0UXF9	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPAC26A3.08\|UniProtKB=Q10163	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_02279\|UniProtKB=B6K215	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CNJ02650\|UniProtKB=Q5KA81	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_12244\|UniProtKB=A0A0D1DVU6	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_01054\|UniProtKB=E3JUJ8	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_8283\|UniProtKB=F4NSS5	Batrachochytrium dendrobatidis	LDO
ENTH1\|EnsemblGenome=CL6EHI_060400\|UniProtKB=C4M6J5	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0272320\|UniProtKB=Q55A45	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_88331\|UniProtKB=F0ZNR3	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_27_1970\|UniProtKB=E9ADH7	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb927.2.4540\|UniProtKB=Q586Q6	Trypanosoma brucei	LDO
GIAIC\|EnsemblGenome=GL50803_10857\|UniProtKB=A8B788	Giardia intestinalis	LDO
TRIV3\|Gene_ORFName=TVAG_269070\|UniProtKB=A2EG20	Trichomonas vaginalis	LDO
PLAF7\|EnsemblGenome=PF3D7_1414800\|UniProtKB=Q8ILU8	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00037295001\|UniProtKB=A0CCJ3	Paramecium tetraurelia	LDO
PARTE\|EnsemblGenome=GSPATT00034014001\|UniProtKB=A0C171	Paramecium tetraurelia	LDO
THAPS\|EnsemblGenome=THAPSDRAFT_31859\|UniProtKB=B8BW36	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3G5N3_PHYRM\|UniProtKB=H3G5N3	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_14g611150v5\|UniProtKB=A0A2K3CX88	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00004p00109230\|UniProtKB=W1NDX8	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_116G00620\|UniProtKB=A0A0K9Q218	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma04_g34970\|UniProtKB=A0A804IXB7	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_030830mg\|UniProtKB=K3ZW48	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3002G045100\|UniProtKB=A0A1B6Q970	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb300870\|UniProtKB=A0A1D6HT10	Zea mays	LDO
MAIZE\|EnsemblGenome=Zm00001eb117150\|UniProtKB=B4FP70	Zea mays	LDO
BRADI\|EnsemblGenome=BRADI_1g56546v3\|UniProtKB=A0A0Q3S6F6	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.2HG0149820\|UniProtKB=F2DP88	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS2B02G270200\|UniProtKB=A0A3B6C7U9	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS2A02G243500\|UniProtKB=A0A3B6AYJ7	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS2D02G248300\|UniProtKB=A0A3B6DFE2	Triticum aestivum	LDO
NELNU\|Gene=LOC104603920\|UniProtKB=A0A1U8Q6I9	Nelumbo nucifera	O
NELNU\|Gene=LOC104610321\|UniProtKB=A0A1U8BFF1	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110788632\|UniProtKB=A0A9R0IH08	Spinacia oleracea	O
SPIOL\|Gene=LOC110785678\|UniProtKB=A0A9R0IBW6	Spinacia oleracea	O
SPIOL\|Gene=LOC110789251\|UniProtKB=A0A9R0IJ72	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr08g0330041\|UniProtKB=A0A251U6U4	Helianthus annuus	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr13g0575621\|UniProtKB=A0A251TPJ5	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C200091810\|UniProtKB=A0A9R1WAC0	Lactuca sativa	O
LACSA\|Gene_ORFName=LSAT_V11C800395470\|UniProtKB=A0A9R1UWA7	Lactuca sativa	O
LACSA\|Gene_ORFName=LSAT_V11C800397310\|UniProtKB=A0A9R1UTZ7	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a011783mg\|UniProtKB=A0A022PVP5	Erythranthe guttata	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a011695mg\|UniProtKB=A0A022QPQ1	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_21787\|UniProtKB=A0A2G2YXL6	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400000167\|UniProtKB=M0ZGT5	Solanum tuberosum	O
SOLTU\|EnsemblGenome=PGSC0003DMG400021647\|UniProtKB=M1BYF7	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc01g094540.3\|UniProtKB=A0A3Q7F5B7	Solanum lycopersicum	O
SOLLC\|EnsemblGenome=Solyc05g049950.3\|UniProtKB=A0A3Q7GMS7	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107825164\|UniProtKB=A0A1S4D2C9	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi13g01053\|UniProtKB=A5BRN5	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_L00005\|UniProtKB=A0A058ZW62	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=DARMORV10_C03P82950.1\|UniProtKB=A0A078GY62	Brassica napus	O
BRACM\|EnsemblGenome=Bra020919\|UniProtKB=M4DWM5	Brassica campestris	O
ARATH\|TAIR=locus=2163416\|UniProtKB=Q9FI15	Arabidopsis thaliana	O
BRACM\|EnsemblGenome=Bra038802\|UniProtKB=M4FCI3	Brassica campestris	O
BRACM\|EnsemblGenome=Bra013465\|UniProtKB=M4DAF5	Brassica campestris	LDO
ARATH\|TAIR=locus=2128610\|UniProtKB=Q9SUN5	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107925138\|UniProtKB=A0A1U8L9C3	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107930376\|UniProtKB=A0A1U8LSE7	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_026981\|UniProtKB=A0A061G6W4	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g023166mg\|UniProtKB=A0A067GQ41	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_011G155700v3\|UniProtKB=U5FZZ4	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_14G127000\|UniProtKB=A0A2C9UN23	Manihot esculenta	LDO
SOYBN\|EnsemblGenome=GLYMA_14G025900\|UniProtKB=I1M6U9	Glycine max	LDO
POPTR\|EnsemblGenome=POPTR_001G440100v3\|UniProtKB=B9NAA2	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_06G060100\|UniProtKB=A0A2C9VNB2	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0771300\|UniProtKB=B9SV79	Ricinus communis	LDO
RICCO\|Gene_ORFName=RCOM_0771080\|UniProtKB=B9SV77	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_02G288900\|UniProtKB=I1JJ67	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_8g080090\|UniProtKB=A0A072TSQ6	Medicago truncatula	O
MEDTR\|EnsemblGenome=MTR_5g092010\|UniProtKB=G7K3F8	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr14_17560\|UniProtKB=A0A2I4FNI2	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_6G526300\|UniProtKB=A0A0A0KPA9	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_6G342400\|UniProtKB=M5W431	Prunus persica	O
PRUPE\|EnsemblGenome=PRUPE_5G168200\|UniProtKB=M5WMX9	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_8957\|UniProtKB=D8QR66	Selaginella moellendorffii	LDO
MARPO\|EnsemblGenome=MARPO_0023s0062\|UniProtKB=A0A2R6XC84	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_004680040\|UniProtKB=A0A1Y1IDA8	Klebsormidium nitens	LDO