PANTHER Gene Information

Gene Symbol(s):

POPTR_001G369600

Organism:

Populus trichocarpa

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Tree

Gene Name:

SAM-dependent MTase RsmB_NOP-type domain-containing protein

Gene ID:

POPTR_001G369600v3

Protein ID:

B9GFZ0

Persistent Id:

PTN002335132

Alternate Ids:

B9GFZ0_POPTR(UniProtKB-ID)	PNT58743(EMBL-CDS)
566153362(GI)	XP_002300386(refSeq)
CM009290(EMBL)	POPTR_001G369600v3(Ensembl)
7485119(GeneID)	B9GFZ0(Synonym)
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PANTHER Classification

PANTHER Family:	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING (PTHR22807)
PANTHER Subfamily:	28S RRNA (CYTOSINE(4447)-C(5))-METHYLTRANSFERASE-RELATED (PTHR22807:SF30)
PANTHER GO-slim Molecular Function:
PANTHER GO-slim Biological Process:	RNA methylation
PANTHER GO-slim Cellular Component:
PANTHER protein class:	RNA methyltransferase

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	RNA methyltransferase activity, rRNA (cytosine-C5-)-methyltransferase activity, RNA binding, methyltransferase activity, S-adenosylmethionine-dependent methyltransferase activity
GO BP Complete:	RNA methylation, maturation of LSU-rRNA, rRNA base methylation, ribosome biogenesis, RNA processing, methylation
GO CC Complete:	nucleolus

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=7867\|UniProtKB=P46087	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000004579.7\|UniProtKB=H2R7K6	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000001926.3\|UniProtKB=G3RU33	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000018683.4\|UniProtKB=F6ZSG5	Macaca mulatta	LDO
MOUSE\|MGI=MGI=107891\|UniProtKB=Q922K7	Mus musculus	LDO
RAT\|RGD=1304616\|UniProtKB=D4ACW1	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000014733.5\|UniProtKB=F1N3G2	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000000696.5\|UniProtKB=F1SLR6	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000012639.4\|UniProtKB=F6S2Y2	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000006876.6\|UniProtKB=M3W6N3	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845028743.1\|UniProtKB=A0A8I3Q5B1	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000018077.4\|UniProtKB=F7EVA4	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000047605.1\|UniProtKB=A0A6I8PHK4	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010022069.1\|UniProtKB=A0A8V0ZNS4	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000006397.4\|UniProtKB=H9GBE5	Anolis carolinensis	LDO
XENLA\|Gene=nop2.L\|UniProtKB=A0A1L8FIN2	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-962291\|UniProtKB=A0A8J0R5R7	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000012153.3\|UniProtKB=H2M9L3	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-050309-7\|UniProtKB=A0A8M1P6F7	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000007050.1\|UniProtKB=W5MJI8	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000008548.3\|UniProtKB=H2XZT6	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118430625\|UniProtKB=A0A9J7MA93	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC582075\|UniProtKB=A0A7M7SZC9	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00021073\|UniProtKB=Q9TYV5	Caenorhabditis elegans	LDO
CAEBR\|WormBase=WBGene00029233\|UniProtKB=A8X3S6	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00277881\|UniProtKB=A0A2A6B3S1	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0033741\|UniProtKB=A1Z909	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP005221\|UniProtKB=Q7PHH2	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC011896\|UniProtKB=D6WZ57	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_205675\|UniProtKB=E9FST6	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW017269\|UniProtKB=B7PDK8	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG98804\|UniProtKB=T1G9P9	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g166855\|UniProtKB=A7S5Z9	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG26585\|UniProtKB=B3RZP1	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_18734\|UniProtKB=A9UX73	Monosiga brevicollis	LDO
YEAST\|SGD=S000005005\|UniProtKB=P40991	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_ADL254W\|UniProtKB=Q75B31	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000190202\|UniProtKB=A0A1D8PSN8	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_B10560g\|UniProtKB=Q6CF36	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_08073\|UniProtKB=Q5AUF7	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_5G01760\|UniProtKB=Q4WE49	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU02511\|UniProtKB=Q7SHV1	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_02092\|UniProtKB=A7E9W2	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_16472\|UniProtKB=Q0TVJ2	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPBP8B7.20c\|UniProtKB=O94268	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_02417\|UniProtKB=B6K2E9	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CNB02220\|UniProtKB=Q5KMC0	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_01467\|UniProtKB=A0A0D1CAC0	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_21386\|UniProtKB=H6QR62	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_1711\|UniProtKB=F4PAD5	Batrachochytrium dendrobatidis	LDO
ENTH1\|EnsemblGenome=CL6EHI_198880\|UniProtKB=C4LWT4	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0281685\|UniProtKB=Q54TL4	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_146818\|UniProtKB=F0Z6Z1	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_25_1500\|UniProtKB=Q4Q9U1	Leishmania major	O
LEIMA\|EnsemblGenome=LMJF_31_0190\|UniProtKB=Q4Q6P5	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb927.4.3840\|UniProtKB=Q583H8	Trypanosoma brucei	LDO
GIAIC\|EnsemblGenome=GL50803_16948\|UniProtKB=A8B636	Giardia intestinalis	LDO
TRIV3\|Gene_ORFName=TVAG_115490\|UniProtKB=A2F7I7	Trichomonas vaginalis	LDO
PLAF7\|EnsemblGenome=PF3D7_1230600\|UniProtKB=Q8I5B4	Plasmodium falciparum	O
PARTE\|EnsemblGenome=GSPATT00005616001\|UniProtKB=A0BV03	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00024278001\|UniProtKB=A0E8D3	Paramecium tetraurelia	O
PLAF7\|EnsemblGenome=PF3D7_1129400\|UniProtKB=Q8II69	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00010757001\|UniProtKB=A0CUX2	Paramecium tetraurelia	LDO
THAPS\|EnsemblGenome=THAPSDRAFT_9908\|UniProtKB=B8CCM3	Thalassiosira pseudonana	O
THAPS\|EnsemblGenome=THAPSDRAFT_21110\|UniProtKB=B8BTD6	Thalassiosira pseudonana	O
THAPS\|EnsemblGenome=THAPSDRAFT_34006\|UniProtKB=B8C1V6	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3GR02_PHYRM\|UniProtKB=H3GR02	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_10g433650v5\|UniProtKB=A0A2K3DA13	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_06g273413v5\|UniProtKB=A0A2K3DNJ8	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00061p00211510\|UniProtKB=U5DFQ0	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_361G00180\|UniProtKB=A0A0K9P694	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma07_g21640\|UniProtKB=A0A804JYA3	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_016463mg\|UniProtKB=K3YQC0	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3004G256000\|UniProtKB=A0A194YRP1	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb253180\|UniProtKB=A0A1D6HIY3	Zea mays	LDO
MAIZE\|EnsemblGenome=Zm00001eb189070\|UniProtKB=B4F9Q9	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os09g0551300\|UniProtKB=Q69MP1	Oryza sativa	LDO
ORYSJ\|EnsemblGenome=Os02g0724600\|UniProtKB=A0A0P0VP26	Oryza sativa	O
BRADI\|EnsemblGenome=BRADI_3g56470v3\|UniProtKB=I1IEC2	Brachypodium distachyon	LDO
WHEAT\|EnsemblGenome=TraesCS6D02G267300\|UniProtKB=A0A3B6QKE8	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6A02G286600\|UniProtKB=A0A3B6NTC2	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6B02G315600\|UniProtKB=A0A3B6PPR4	Triticum aestivum	LDO
NELNU\|Gene=LOC104611059\|UniProtKB=A0A1U8B9D3	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110782072\|UniProtKB=A0A9R0I3X0	Spinacia oleracea	O
SPIOL\|Gene=LOC110782071\|UniProtKB=A0A9R0I5E2	Spinacia oleracea	LDO
HELAN\|Gene_ORFName=HanXRQr2_Chr11g0502831\|UniProtKB=A0A9K3HQQ6	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C100004320\|UniProtKB=A0A9R1XY57	Lactuca sativa	O
LACSA\|Gene_ORFName=LSAT_V11C200067250\|UniProtKB=A0A9R1WEI3	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a003044mg\|UniProtKB=A0A022QYN0	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_30120\|UniProtKB=A0A2G2Y7F9	Capsicum annuum	O
CAPAN\|EnsemblGenome=T459_26263\|UniProtKB=A0A2G2YN16	Capsicum annuum	O
CAPAN\|EnsemblGenome=T459_05782\|UniProtKB=A0A2G3A8U7	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400022346\|UniProtKB=M1C190	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc02g079415.1\|UniProtKB=A0A3Q7F6G7	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107763385\|UniProtKB=A0A1S3XBQ8	Nicotiana tabacum	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_F02036\|UniProtKB=A0A059BR33	Eucalyptus grandis	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_C03787\|UniProtKB=A0A059CWR2	Eucalyptus grandis	O
BRANA\|Gene_ORFName=DARMORV10_C09P46870.1\|UniProtKB=A0A078GVF6	Brassica napus	O
BRANA\|Gene_ORFName=GSBRNA2T00095477001\|UniProtKB=A0A078FXA1	Brassica napus	O
BRACM\|EnsemblGenome=Bra002867\|UniProtKB=M4CF85	Brassica campestris	O
BRANA\|EnsemblGenome=GSBRNA2T00069132001\|UniProtKB=A0A078JNG7	Brassica napus	O
BRACM\|EnsemblGenome=Bra035594\|UniProtKB=M4F3E4	Brassica campestris	O
ARATH\|TAIR=locus=2178393\|UniProtKB=Q9FG73	Arabidopsis thaliana	O
BRACM\|EnsemblGenome=Bra026418\|UniProtKB=M4ECA9	Brassica campestris	LDO
ARATH\|TAIR=locus=2133832\|UniProtKB=Q8VYM6	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107922470\|UniProtKB=A0A1U8L3T4	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107888173\|UniProtKB=A0A1U8HV11	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_030602\|UniProtKB=A0A061F4Y6	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g011002mg\|UniProtKB=A0A067EVU7	Citrus sinensis	LDO
MANES\|EnsemblGenome=MANES_11G044000\|UniProtKB=A0A2C9UYB8	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0523120\|UniProtKB=B9S9W8	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_18G075000\|UniProtKB=I1N087	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_08G332000\|UniProtKB=I1KYM5	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_3g460700\|UniProtKB=A0A072V7D7	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr02_26120\|UniProtKB=A0A2I4E1X6	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_7G132920\|UniProtKB=A0A0A0K549	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_8G036800\|UniProtKB=A0A251MSF4	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_86634\|UniProtKB=D8R7I7	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_437511\|UniProtKB=D8QMN6	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c1_15210\|UniProtKB=A0A2K1L8B2	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0034s0108\|UniProtKB=A0A2R6X5Z7	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_003420080\|UniProtKB=A0A1Y1ICU6	Klebsormidium nitens	LDO
KORCO\|EnsemblGenome=Kcr_1076\|UniProtKB=B1L5U3	Korarchaeum cryptofilum	LDO
THEKO\|EnsemblGenome=TK0360\|UniProtKB=Q5JCY9	Thermococcus kodakaraensis	LDO
SACS2\|EnsemblGenome=SSO0122\|UniProtKB=Q980Z5	Sulfolobus solfataricus	O
PYRAE\|EnsemblGenome=PAE3578\|UniProtKB=Q8ZSU5	Pyrobaculum aerophilum	O
THEKO\|EnsemblGenome=TK2304\|UniProtKB=Q5JDB4	Thermococcus kodakaraensis	O
SACS2\|EnsemblGenome=SSO0252\|UniProtKB=Q980N8	Sulfolobus solfataricus	O
METJA\|EnsemblGenome=MJ_0026\|UniProtKB=Q60343	Methanocaldococcus jannaschii	O
HALSA\|EnsemblGenome=VNG_0499G\|UniProtKB=Q9HRX7	Halobacterium salinarum	O
THEKO\|EnsemblGenome=TK1935\|UniProtKB=Q5JDP5	Thermococcus kodakaraensis	O
THEKO\|EnsemblGenome=TK0872\|UniProtKB=Q5JI15	Thermococcus kodakaraensis	O
STRR6\|EnsemblGenome=spr1259\|UniProtKB=Q8DPB0	Streptococcus pneumoniae	LDO
BACTN\|EnsemblGenome=BT_2042\|UniProtKB=Q8A644	Bacteroides thetaiotaomicron	LDO
STRCO\|Gene_OrderedLocusName=SCO1472\|UniProtKB=Q9L0Y7	Streptomyces coelicolor	O
MYCTU\|Gene_OrderedLocusName=Rv1407\|UniProtKB=P9WGX3	Mycobacterium tuberculosis	O
CLOBH\|Gene_OrderedLocusName=CBO2507\|UniProtKB=A5I4T5	Clostridium botulinum	O
STRR6\|EnsemblGenome=spr1579\|UniProtKB=Q8DNR8	Streptococcus pneumoniae	O
STAA8\|EnsemblGenome=SAOUHSC_01184\|UniProtKB=Q2FZ67	Staphylococcus aureus	O
LISMO\|Gene=Q8Y677_LISMO\|UniProtKB=Q8Y677	Listeria monocytogenes	O
BACSU\|EnsemblGenome=BSU_15740\|UniProtKB=P94464	Bacillus subtilis	O
BACCR\|EnsemblGenome=BC_3863\|UniProtKB=Q819U2	Bacillus cereus	O
THEMA\|EnsemblGenome=TM_1512\|UniProtKB=Q9X1K0	Thermotoga maritima	O
DEIRA\|EnsemblGenome=DR_2168\|UniProtKB=Q9RSF6	Deinococcus radiodurans	O
SYNY3\|EnsemblGenome=BAA16960\|UniProtKB=P72943	Synechocystis	O
CHLTR\|EnsemblGenome=CT_553\|UniProtKB=O84557	Chlamydia trachomatis	O
RHOBA\|EnsemblGenome=RB10533\|UniProtKB=Q7UEV6	Rhodopirellula baltica	O
THEYD\|EnsemblGenome=THEYE_A0326\|UniProtKB=B5YIL4	Thermodesulfovibrio yellowstonii	O
DICTD\|EnsemblGenome=Dtur_1437\|UniProtKB=B8E0X4	Dictyoglomus turgidum	O
FUSNN\|EnsemblGenome=FN0313\|UniProtKB=Q8R6A9	Fusobacterium nucleatum	O
NEIMB\|EnsemblGenome=NMB1351\|UniProtKB=Q9JZ03	Neisseria meningitidis serogroup b	O
BRADU\|Gene=Q89N57_BRADU\|UniProtKB=Q89N57	Bradyrhizobium diazoefficiens	O
SHEON\|Gene_OrderedLocusName=SO_2215\|UniProtKB=Q8EEZ4	Shewanella oneidensis	O
NEIMB\|EnsemblGenome=NMB0112\|UniProtKB=Q9K1K5	Neisseria meningitidis serogroup b	O
GEOSL\|EnsemblGenome=GSU2749\|UniProtKB=Q749J3	Geobacter sulfurreducens	O
GEOSL\|EnsemblGenome=GSU3373\|UniProtKB=Q746Z4	Geobacter sulfurreducens	O
BRADU\|Gene=sun\|UniProtKB=Q89WU9	Bradyrhizobium diazoefficiens	O
COXBU\|EnsemblGenome=CBU_1915\|UniProtKB=P45679	Coxiella burnetii	O
HAEIN\|EnsemblGenome=HI_0624\|UniProtKB=P44788	Haemophilus influenzae	O
SHEON\|Gene_OrderedLocusName=SO_1575\|UniProtKB=Q8EGM5	Shewanella oneidensis	O
SHEON\|Gene_OrderedLocusName=SO_0030\|UniProtKB=Q8EKR0	Shewanella oneidensis	O
VIBCH\|EnsemblGenome=VC_0044\|UniProtKB=Q9KVU5	Vibrio cholerae	O
XANCP\|EnsemblGenome=XCC3747\|UniProtKB=Q8P4G1	Xanthomonas campestris	O
PSEAE\|EnsemblGenome=PA0017\|UniProtKB=Q9I7A9	Pseudomonas aeruginosa	O
SALTY\|EnsemblGenome=STM3408\|UniProtKB=Q8ZLM5	Salmonella typhimurium	O
YERPE\|EnsemblGenome=YP_0238\|UniProtKB=Q8ZJ81	Yersinia pestis	O
ECOLI\|EnsemblGenome=BAE78003\|UniProtKB=P36929	Escherichia coli	O