PANTHER Gene Information

Gene Symbol(s):

POPTR_005G098500

Organism:

Populus trichocarpa

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Gene Name:

RNA polymerase I-specific transcription initiation factor RRN3

Gene ID:

POPTR_005G098500v3

Protein ID:

B9H643

Persistent Id:

PTN007591210

Alternate Ids:

7480445(GeneID)	PNT35892(EMBL-CDS)
B9H643(Synonym)	POPTR_005G098500v3(Ensembl)
XM_002307162(refSeq)	CM009294(EMBL)
B9H643_POPTR(UniProtKB-ID)	566170490(GI)
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PANTHER Classification

PANTHER Family:	TRANSCRIPTION INITIATION FACTOR IA RRN3 (PTHR12790)
PANTHER Subfamily:	RNA POLYMERASE I-SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3-RELATED (PTHR12790:SF0)
PANTHER GO-slim Molecular Function:	RNA polymerase core enzyme binding
PANTHER GO-slim Biological Process:	transcription by RNA polymerase I DNA-templated transcription initiation
PANTHER GO-slim Cellular Component:	nucleus
PANTHER protein class:	general transcription factor

Pathway Categories:

General transcription by RNA polymerase I

RNA Polymerase I Complex

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	RNA polymerase I core binding, RNA polymerase I general transcription initiation factor activity
GO BP Complete:	transcription initiation at RNA polymerase I promoter
GO CC Complete:	nucleus

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=37619\|UniProtKB=A6NIE6	Homo sapiens	O
HUMAN\|HGNC=30346\|UniProtKB=Q9NYV6	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000007801.5\|UniProtKB=H2QAM4	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000003478.3\|UniProtKB=G3QLR0	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000002991.4\|UniProtKB=H9FW48	Macaca mulatta	LDO
MOUSE\|MGI=MGI=1925255\|UniProtKB=B2RS91	Mus musculus	LDO
RAT\|RGD=1305001\|UniProtKB=A0A0G2K8U0	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000004804.6\|UniProtKB=E1B883	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000033356.3\|UniProtKB=A0A287BL74	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000008861.4\|UniProtKB=A0A9L0QXJ9	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000015340.6\|UniProtKB=A0A337SNP2	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845010361.1\|UniProtKB=A0A8I3NAG1	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000004597.4\|UniProtKB=F6QIM4	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000000130.4\|UniProtKB=A0A6I8N5N9	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010020171.1\|UniProtKB=A0A8V0Z6C4	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000003912.4\|UniProtKB=H9G8B1	Anolis carolinensis	LDO
XENLA\|Gene=rrn3.L\|UniProtKB=A0A8J0TJC3	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-990491\|UniProtKB=A0A6I8QER1	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000026398.1\|UniProtKB=A0A3B3IEU8	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-080225-1\|UniProtKB=A0A0R4ICI5	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000007390.1\|UniProtKB=W5MKR4	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000012588.2\|UniProtKB=F6Y3X0	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118429750\|UniProtKB=A0A9J7M7K0	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC578942\|UniProtKB=A0A7M7NQG6	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00007980\|UniProtKB=P48322	Caenorhabditis elegans	LDO
CAEBR\|WormBase=WBGene00026455\|UniProtKB=A8WVH5	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00278159\|UniProtKB=A0A2A6BIY1	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0032988\|UniProtKB=Q9V9M6	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP009024\|UniProtKB=A0A1S4GZW1	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC030743\|UniProtKB=D6X392	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_223699\|UniProtKB=E9GCY8	Daphnia pulex	LDO
HELRO\|EnsemblGenome=HelroG187961\|UniProtKB=T1FPI3	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g238932\|UniProtKB=A7RKI6	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG52940\|UniProtKB=B3RMV4	Trichoplax adhaerens	LDO
YEAST\|SGD=S000001608\|UniProtKB=P36070	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_ABL027W\|UniProtKB=Q75DP4	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000198505\|UniProtKB=Q59L42	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_D26994g\|UniProtKB=Q6C7M0	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_00312\|UniProtKB=Q5BGL8	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_1G02590\|UniProtKB=Q4WKG1	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU09247\|UniProtKB=Q7SF63	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_04421\|UniProtKB=A7EGI0	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_04337\|UniProtKB=Q0UV77	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPAC18G6.11c\|UniProtKB=Q10110	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_01744\|UniProtKB=B6JYS6	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CND04160\|UniProtKB=Q5KI55	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_01371\|UniProtKB=A0A0D1E7K3	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_04237\|UniProtKB=E3K2W1	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_1623\|UniProtKB=F4NZV8	Batrachochytrium dendrobatidis	LDO
ENTH1\|EnsemblGenome=CL6EHI_035130\|UniProtKB=C4M4Z3	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0289587\|UniProtKB=Q54HB0	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_81920\|UniProtKB=F0ZUZ6	Dictyostelium purpureum	LDO
GIAIC\|EnsemblGenome=GL50803_11742\|UniProtKB=A8B8V3	Giardia intestinalis	LDO
TRIV3\|Gene_ORFName=TVAG_366300\|UniProtKB=A2DHS4	Trichomonas vaginalis	LDO
TRIV3\|Gene_ORFName=TVAG_416970\|UniProtKB=A2ESF5	Trichomonas vaginalis	O
PARTE\|EnsemblGenome=GSPATT00027869001\|UniProtKB=A0BE70	Paramecium tetraurelia	LDO
PARTE\|EnsemblGenome=GSPATT00015850001\|UniProtKB=A0DD74	Paramecium tetraurelia	O
THAPS\|EnsemblGenome=THAPSDRAFT_25139\|UniProtKB=B8LCL2	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3GYT5_PHYRM\|UniProtKB=H3GYT5	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_03g207950v5\|UniProtKB=A0A2K3DYV6	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00022p00154500\|UniProtKB=W1PNE8	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_64G00210\|UniProtKB=A0A0K9NSQ1	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma01_g12950\|UniProtKB=A0A804HTH1	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma03_g11430\|UniProtKB=A0A804IAX2	Musa acuminata subsp. malaccensis	LDO
SORBI\|EnsemblGenome=SORBI_3010G239600\|UniProtKB=A0A194YL28	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb226160\|UniProtKB=A0A1D6GUB9	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os06g0688100\|UniProtKB=Q653F3	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_1g33330v3\|UniProtKB=I1GWE1	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.7HG0730720\|UniProtKB=A0A8I6YIH8	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS6D02G161100\|UniProtKB=A0A3B6QDJ3	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS4B02G109300\|UniProtKB=A0A3B6INK6	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS7B02G339300\|UniProtKB=A0A3B6SRJ9	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6A02G171400\|UniProtKB=A0A3B6NP42	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS7D02G430000\|UniProtKB=A0A3B6TQ83	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6B02G199600\|UniProtKB=A0A3B6PIW5	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS7A02G440500\|UniProtKB=A0A3B6RPN6	Triticum aestivum	LDO
NELNU\|Gene=LOC104608523\|UniProtKB=A0A1U8B9V8	Nelumbo nucifera	O
NELNU\|Gene=LOC104608522\|UniProtKB=A0A1U8QAR7	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110800471\|UniProtKB=A0A9R0J6P9	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr09g0408051\|UniProtKB=A0A251TZW1	Helianthus annuus	O
HELAN\|EnsemblGenome=HanXRQr2_Chr16g0745471\|UniProtKB=A0A251RYH8	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C500239670\|UniProtKB=A0A9R1VI08	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a004171mg\|UniProtKB=A0A022RAU0	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_06068\|UniProtKB=A0A2G3A9N2	Capsicum annuum	LDO
SOLLC\|EnsemblGenome=Solyc02g082340.3\|UniProtKB=A0A3Q7F5Z3	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107795460\|UniProtKB=A0A1S4AAC2	Nicotiana tabacum	O
TOBAC\|Gene=LOC107781665\|UniProtKB=A0A1S3YZZ1	Nicotiana tabacum	O
TOBAC\|Gene=LOC107816212\|UniProtKB=A0A1S4C8D3	Nicotiana tabacum	O
TOBAC\|Gene=LOC107772905\|UniProtKB=A0A1S3Y788	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi04g01736\|UniProtKB=F6I0C5	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_J02557\|UniProtKB=A0A059AHZ5	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=GSBRNA2T00050239001\|UniProtKB=A0A078H2B1	Brassica napus	O
BRACM\|EnsemblGenome=Bra005396\|UniProtKB=M4CMF8	Brassica campestris	O
BRANA\|Gene_ORFName=GSBRNA2T00077004001\|UniProtKB=A0A078I3H0	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra022989\|UniProtKB=M4E2I8	Brassica campestris	O
BRACM\|EnsemblGenome=Bra021928\|UniProtKB=M4DZI1	Brassica campestris	LDO
ARATH\|TAIR=locus=2204609\|UniProtKB=A0A1P8APA8	Arabidopsis thaliana	O
ARATH\|TAIR=locus=2056063\|UniProtKB=Q1PEV9	Arabidopsis thaliana	O
ARATH\|TAIR=locus=2061574\|UniProtKB=Q8L643	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107949552\|UniProtKB=A0A1U8NNU1	Gossypium hirsutum	O
GOSHI\|Gene=LOC107951635\|UniProtKB=A0A1U8NW90	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_000027\|UniProtKB=A0A061DG04	Theobroma cacao	LDO
MANES\|EnsemblGenome=MANES_11G091200\|UniProtKB=A0A2C9V1Q5	Manihot esculenta	O
MANES\|EnsemblGenome=MANES_01G157300\|UniProtKB=A0A2C9WNG6	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0970060\|UniProtKB=B9SEL3	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_09G196200\|UniProtKB=I1L4N8	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_16G112800\|UniProtKB=I1MMT8	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_4g117680\|UniProtKB=A0A072UQX1	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr06_19580\|UniProtKB=A0A2I4H2G7	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_3G122360\|UniProtKB=A0A0A0L7G6	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_7G186400\|UniProtKB=M5W7Q8	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_405493\|UniProtKB=D8QYR6	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_440149\|UniProtKB=D8R8X2	Selaginella moellendorffii	O
PHYPA\|EnsemblGenome=Pp3c18_6750\|UniProtKB=A0A2K1J064	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c21_14490\|UniProtKB=A0A2K1IRX9	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0144s0013\|UniProtKB=A0A2R6W624	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_004600070\|UniProtKB=A0A1Y1IJA6	Klebsormidium nitens	LDO