PANTHER Gene Information

Gene Symbol(s):

POPTR_006G121300

Organism:

Populus trichocarpa

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Gene Name:

Matrin-type domain-containing protein

Gene ID:

POPTR_006G121300v3

Protein ID:

U5GA38

Persistent Id:

PTN002354170

Alternate Ids:

18100124(GeneID)	U5GA38_POPTR(UniProtKB-ID)
XM_006381312(refSeq)	U5GA38(Synonym)
CM009295(EMBL)	PNT31194(EMBL-CDS)
566175887(GI)	POPTR_006G121300v3(Ensembl)
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PANTHER Classification

PANTHER Family:	SPLICING FACTOR 3A SUBUNIT 2 (PTHR23205)
PANTHER Subfamily:	SPLICING FACTOR 3A SUBUNIT 2 (PTHR23205:SF0)
PANTHER GO-slim Molecular Function:
PANTHER GO-slim Biological Process:	spliceosomal complex assembly
PANTHER GO-slim Cellular Component:	U2-type prespliceosome catalytic step 2 spliceosome U2 snRNP
PANTHER protein class:	RNA splicing factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	nucleic acid binding, zinc ion binding
GO BP Complete:	RNA splicing, mRNA processing, spliceosomal complex assembly
GO CC Complete:	nucleus, catalytic step 2 spliceosome, spliceosomal complex, U2-type prespliceosome, U2 snRNP

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=10766\|UniProtKB=Q15428	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000010227.4\|UniProtKB=H2QEW0	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000006613.3\|UniProtKB=G3QUR2	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000010111.4\|UniProtKB=A0A5F8AK83	Macaca mulatta	LDO
MOUSE\|MGI=MGI=104912\|UniProtKB=Q62203	Mus musculus	LDO
RAT\|RGD=1308627\|UniProtKB=Q6AXT8	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000025452\|UniProtKB=A5PJN8	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000061881.1\|UniProtKB=A0A287AN25	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000034241.2\|UniProtKB=A0A3Q2H3Z3	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000030476.4\|UniProtKB=M3X4F3	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845012454.1\|UniProtKB=A0A8I3NBJ0	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000004681.4\|UniProtKB=F6U6H6	Monodelphis domestica	LDO
CHICK\|Ensembl=ENSGALG00010027884.1\|UniProtKB=A0A8V1AAU7	Gallus gallus	LDO
XENLA\|Gene=sf3a2.S\|UniProtKB=Q8AVV0	Xenopus laevis	O
XENLA\|Gene=sf3a2.L\|UniProtKB=Q3KQ40	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-492856\|UniProtKB=Q6GLH3	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000015301.2\|UniProtKB=H2MKF1	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-040426-897\|UniProtKB=Q7ZVD4	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000005835.1\|UniProtKB=W5MF86	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000003319.3\|UniProtKB=Q1RPZ2	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118432032\|UniProtKB=A0A9J7MEP8	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC576257\|UniProtKB=A0A7M7PDK8	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00008683\|UniProtKB=Q19335	Caenorhabditis elegans	LDO
CAEBR\|WormBase=WBGene00028530\|UniProtKB=A8X0L8	Caenorhabditis briggsae	LDO
DROME\|FlyBase=FBgn0036314\|UniProtKB=Q9VU15	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP011035\|UniProtKB=Q7QK13	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC007585\|UniProtKB=D2A323	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_226064\|UniProtKB=E9GVV4	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW017352\|UniProtKB=B7P952	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG113995\|UniProtKB=T1EFY0	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g243113\|UniProtKB=A7S618	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG63497\|UniProtKB=B3RL45	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_9933\|UniProtKB=A9V4P3	Monosiga brevicollis	LDO
YEAST\|SGD=S000002201\|UniProtKB=Q07350	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_AEL014C\|UniProtKB=Q757M2	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000185007\|UniProtKB=Q5APP1	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_D25652g\|UniProtKB=Q6C7S9	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_05530\|UniProtKB=Q5B1Q0	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_4G11880\|UniProtKB=Q4WQ80	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU07299\|UniProtKB=V5IMK0	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_01195\|UniProtKB=A7E7B8	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_15022\|UniProtKB=Q0TZL0	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPBC21C3.05\|UniProtKB=Q9P7L8	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_00498\|UniProtKB=B6JVT0	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CND02290\|UniProtKB=Q5KIN9	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_11019\|UniProtKB=A0A0D1CGM0	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_06363\|UniProtKB=E3K7Z4	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_29868\|UniProtKB=F4P0P2	Batrachochytrium dendrobatidis	LDO
ENTH1\|EnsemblGenome=CL6EHI_117940\|UniProtKB=C4LYX8	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0293876\|UniProtKB=Q54B65	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_80279\|UniProtKB=F0ZQ13	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_02_0130\|UniProtKB=E9AC87	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb927.2.2270\|UniProtKB=Q586K6	Trypanosoma brucei	LDO
GIAIC\|EnsemblGenome=GL50803_10755\|UniProtKB=A8BJH8	Giardia intestinalis	LDO
TRIV3\|Gene_ORFName=TVAG_476600\|UniProtKB=A2DA83	Trichomonas vaginalis	LDO
PLAF7\|EnsemblGenome=PF3D7_0619900\|UniProtKB=C6KT39	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00022615001\|UniProtKB=A0E2C6	Paramecium tetraurelia	LDO
PARTE\|EnsemblGenome=GSPATT00033365001\|UniProtKB=A0BY95	Paramecium tetraurelia	O
THAPS\|EnsemblGenome=THAPSDRAFT_40978\|UniProtKB=B8C5H5	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3G6L1_PHYRM\|UniProtKB=H3G6L1	Phytophthora ramorum	O
PHYRM\|Gene=H3G7S5_PHYRM\|UniProtKB=H3G7S5	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_06g252700v5\|UniProtKB=A8HYG6	Chlamydomonas reinhardtii	LDO
ZOSMR\|Gene_ORFName=ZOSMA_64G00720\|UniProtKB=A0A0K9NV43	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma06_g21590\|UniProtKB=A0A804JIV1	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma02_g04270\|UniProtKB=A0A804HZ47	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_036656mg\|UniProtKB=K4ACP9	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3001G428400\|UniProtKB=C5WQ64	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb398100\|UniProtKB=B4FY18	Zea mays	O
MAIZE\|EnsemblGenome=Zm00001eb011590\|UniProtKB=B4FPG3	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os03g0263500\|UniProtKB=Q10NP6	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_1g67320v3\|UniProtKB=I1H772	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.4HG0390010\|UniProtKB=A0A8I6XRI6	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS4A02G088700\|UniProtKB=A0A3B6HRQ3	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS4B02G215500\|UniProtKB=W5E2T2	Triticum aestivum	LDO
NELNU\|Gene=LOC104604567\|UniProtKB=A0A1U8AMH7	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110804973\|UniProtKB=A0A9R0JDY6	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr06g0273571\|UniProtKB=A0A251SRL4	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C100021180\|UniProtKB=A0A9R1WHH8	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a009989mg\|UniProtKB=A0A022RM87	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_22531\|UniProtKB=A0A2G2YPR1	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400003874\|UniProtKB=M0ZX29	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc09g008470.3\|UniProtKB=A0A3Q7HYL3	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107822419\|UniProtKB=A0A1S4CTK9	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi08g01591\|UniProtKB=F6HKD0	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_K02436\|UniProtKB=A0A059A616	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=DARMORV10_C04P17070.1\|UniProtKB=A0A078FJ85	Brassica napus	O
BRANA\|Gene_ORFName=DARMORV10_A05P13300.1\|UniProtKB=A0A078J836	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra005605\|UniProtKB=M4CN17	Brassica campestris	LDO
ARATH\|TAIR=locus=2060279\|UniProtKB=O80897	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107908741\|UniProtKB=A0A1U8JMI3	Gossypium hirsutum	O
GOSHI\|Gene=LOC107907325\|UniProtKB=A0A1U8JIM4	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_022302\|UniProtKB=A0A061ET11	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g019781mg\|UniProtKB=A0A067DQU6	Citrus sinensis	LDO
MANES\|EnsemblGenome=MANES_09G061900\|UniProtKB=A0A2C9V8D4	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_1353370\|UniProtKB=B9S0D2	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_13G367400\|UniProtKB=I1M5W5	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_15G005900\|UniProtKB=I1MCD5	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_8g009970\|UniProtKB=A0A072TWV3	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr04_22510\|UniProtKB=A0A2I4H3A8	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_3G743440\|UniProtKB=A0A0A0LEB1	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_4G071900\|UniProtKB=A0A251PGZ6	Prunus persica	O
PRUPE\|EnsemblGenome=PRUPE_7G125300\|UniProtKB=A0A251NAN7	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_180432\|UniProtKB=D8SK46	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_131763\|UniProtKB=D8T4H2	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_139049\|UniProtKB=D8TGJ7	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c9_13030\|UniProtKB=A0A2K1K311	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c4_2800\|UniProtKB=A0A2K1KLZ4	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c15_8160\|UniProtKB=A0A2K1JCI0	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0069s0004\|UniProtKB=A0A2R6WP87	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_000220510\|UniProtKB=A0A1Y1HR21	Klebsormidium nitens	LDO