PANTHER Gene Information

Gene Symbol(s):

POPTR_014G101800

Organism:

Populus trichocarpa

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Gene Name:

RRM domain-containing protein

Gene ID:

POPTR_014G101800v3

Protein ID:

U5FV37

Persistent Id:

PTN004612339

Alternate Ids:

U5FV37(Synonym)	XP_006375375(refSeq)
CM009303(EMBL)	PNT04023(EMBL-CDS)
566203443(GI)	POPTR_014G101800v3(Ensembl)
U5FV37_POPTR(UniProtKB-ID)
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PANTHER Classification

PANTHER Family:	SERINE/ARGININE RICH SPLICING FACTOR (PTHR23147)
PANTHER Subfamily:	SERINE_ARGININE-RICH SPLICING FACTOR RS31-RELATED (PTHR23147:SF146)
PANTHER GO-slim Molecular Function:	RNA binding
PANTHER GO-slim Biological Process:	mRNA splicing, via spliceosome
PANTHER GO-slim Cellular Component:	nuclear speck
PANTHER protein class:	RNA splicing factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	RNA binding
GO BP Complete:	RNA splicing, mRNA processing, mRNA splicing, via spliceosome
GO CC Complete:	nuclear speck, spliceosomal complex

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=9901\|UniProtKB=Q9BWF3	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000044792.1\|UniProtKB=A0A2I3SJ02	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000043023.1\|UniProtKB=A0A2I2YPQ6	Gorilla gorilla gorilla	O
MOUSE\|MGI=MGI=1100865\|UniProtKB=Q8C7Q4	Mus musculus	O
BOVIN\|Ensembl=ENSBTAG00000031688\|UniProtKB=Q3MHX3	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000058325.1\|UniProtKB=A0A8W4FIS0	Sus scrofa	O
FELCA\|Ensembl=ENSFCAG00000029651.4\|UniProtKB=A0A2I2U7A9	Felis catus	O
MONDO\|Ensembl=ENSMODG00000041004.1\|UniProtKB=A0A5F8H5H9	Monodelphis domestica	O
HUMAN\|HGNC=28842\|UniProtKB=Q9BQ04	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000003935.3\|UniProtKB=H2Q476	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000025398.2\|UniProtKB=A0A2I2Y471	Gorilla gorilla gorilla	O
GORGO\|Ensembl=ENSGGOG00000011698.3\|UniProtKB=G3R7Q9	Gorilla gorilla gorilla	O
MOUSE\|MGI=MGI=1913954\|UniProtKB=Q8VE92	Mus musculus	O
RAT\|RGD=1359343\|UniProtKB=Q64LC9	Rattus norvegicus	O
BOVIN\|Ensembl=ENSBTAG00000000423.5\|UniProtKB=Q2KIV3	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000038304\|UniProtKB=Q06AT9	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000022987.4\|UniProtKB=F6VSG0	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000007394.5\|UniProtKB=A0A2I2URJ9	Felis catus	O
CANLF\|Ensembl=ENSCAFG00845012293.1\|UniProtKB=A0A8I3NC39	Canis lupus familiaris	O
MONDO\|Ensembl=ENSMODG00000008056.4\|UniProtKB=F6Z9I7	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000003143.3\|UniProtKB=A0A6I8NML9	Ornithorhynchus anatinus	O
ORNAN\|Ensembl=ENSOANG00000037726.1\|UniProtKB=A0A6I8PQA1	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010000581.1\|UniProtKB=A0A8V0X364	Gallus gallus	O
ANOCA\|Ensembl=ENSACAG00000007805.4\|UniProtKB=H9GD18	Anolis carolinensis	O
ORYLA\|Ensembl=ENSORLG00000024749.1\|UniProtKB=H2M7R2	Oryzias latipes	O
ORYLA\|Ensembl=ENSORLG00000011589.2\|UniProtKB=A0A3B3H610	Oryzias latipes	O
DANRE\|Gene=rbm4.3\|UniProtKB=A0A8M2BJM8	Danio rerio	O
LEPOC\|Ensembl=ENSLOCG00000002755.1\|UniProtKB=W5M4D4	lepisosteus oculatus	O
ORYLA\|Ensembl=ENSORLG00000012496.2\|UniProtKB=H2MAT6	Oryzias latipes	O
DANRE\|ZFIN=ZDB-GENE-030131-3019\|UniProtKB=Q803F7	Danio rerio	O
DANRE\|ZFIN=ZDB-GENE-030131-3902\|UniProtKB=Q6IQ97	Danio rerio	O
HUMAN\|HGNC=14219\|UniProtKB=Q96PK6	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000003934.6\|UniProtKB=G2HHY2	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000014455.3\|UniProtKB=G3R212	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000020363.4\|UniProtKB=G7NC47	Macaca mulatta	O
MOUSE\|MGI=MGI=1929092\|UniProtKB=Q8C2Q3	Mus musculus	O
RAT\|RGD=620542\|UniProtKB=M0R9Q1	Rattus norvegicus	O
BOVIN\|Ensembl=ENSBTAG00000001225.4\|UniProtKB=F1MI47	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000038008.3\|UniProtKB=A0A287B401	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000022859.4\|UniProtKB=A0A9L0SZX2	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000007392.5\|UniProtKB=M3W7N2	Felis catus	O
CANLF\|Ensembl=ENSCAFG00845012400.1\|UniProtKB=A0A8I3RX26	Canis lupus familiaris	O
ORNAN\|Ensembl=ENSOANG00000042996.1\|UniProtKB=A0A6I8PBY1	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010000584.1\|UniProtKB=A0A8V0X366	Gallus gallus	O
ANOCA\|Ensembl=ENSACAG00000012696.4\|UniProtKB=H9GJ57	Anolis carolinensis	O
XENLA\|Gene=rbm4.L\|UniProtKB=A0A1L8GJI3	Xenopus laevis	O
DANRE\|ZFIN=ZDB-GENE-040426-1811\|UniProtKB=Q6P0G2	Danio rerio	O
CIOIN\|Ensembl=ENSCING00000008757.2\|UniProtKB=F6T0B7	Ciona intestinalis	O
CIOIN\|Ensembl=ENSCING00000020584.1\|UniProtKB=H2XR28	Ciona intestinalis	O
CIOIN\|Ensembl=ENSCING00000012786.2\|UniProtKB=F6XCS0	Ciona intestinalis	O
CAEEL\|WormBase=WBGene00004384\|UniProtKB=Q10667	Caenorhabditis elegans	O
CAEBR\|Gene_ORFName=CBG23404\|UniProtKB=A8Y3Z9	Caenorhabditis briggsae	O
PRIPA\|EnsemblGenome=WBGene00103614\|UniProtKB=A0A2A6CTD0	Pristionchus pacificus	O
DROME\|FlyBase=FBgn0011640\|UniProtKB=Q94901	Drosophila melanogaster	O
TRICA\|EnsemblGenome=TC006476\|UniProtKB=D6WX34	Tribolium castaneum	O
ANOGA\|EnsemblGenome=AGAP002390\|UniProtKB=Q7QC08	Anopheles gambiae	O
TRICA\|EnsemblGenome=TC009189\|UniProtKB=D6WTA3	Tribolium castaneum	O
DAPPU\|EnsemblGenome=DAPPUDRAFT_98603\|UniProtKB=E9G592	Daphnia pulex	O
HELRO\|EnsemblGenome=HelroG193900\|UniProtKB=T1FVG6	helobdella robusta	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g141804\|UniProtKB=A7T1I7	Nematostella vectensis	O
CANAL\|CGD=CAL0000175616\|UniProtKB=A0A1D8PLU0	Candida albicans	O
EMENI\|EnsemblGenome=ANIA_05802\|UniProtKB=Q5B0X8	Emericella nidulans	O
ASPFU\|EnsemblGenome=AFUA_2G07410\|UniProtKB=Q4X276	Neosartorya fumigata	O
NEUCR\|EnsemblGenome=NCU03990\|UniProtKB=V5INA7	Neurospora crassa	O
SCLS1\|Gene_ORFName=SS1G_10587\|UniProtKB=A7EZ21	Sclerotinia sclerotiorum	O
PHANO\|EnsemblGenome=SNOG_09484\|UniProtKB=Q0UFI0	Phaeosphaeria nodorum	O
SCHPO\|PomBase=SPAC222.18\|UniProtKB=C6Y4C0	Schizosaccharomyces pombe	O
USTMA\|EnsemblGenome=UMAG_02469\|UniProtKB=A0A0D1C969	Ustilago maydis	O
PUCGT\|EnsemblGenome=PGTG_09124\|UniProtKB=E3KG75	Puccinia graminis	O
BATDJ\|Gene_ORFName=BATDEDRAFT_88044\|UniProtKB=F4P1C1	Batrachochytrium dendrobatidis	O
PARTE\|EnsemblGenome=GSPATT00017568001\|UniProtKB=A0DJK7	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00001999001\|UniProtKB=A0D7E0	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00005106001\|UniProtKB=A0BP90	Paramecium tetraurelia	O
PHYRM\|Gene=H3H078_PHYRM\|UniProtKB=H3H078	Phytophthora ramorum	O
CHLRE\|EnsemblGenome=CHLRE_16g674250v5\|UniProtKB=A0A2K3CVI3	Chlamydomonas reinhardtii	O
AMBTC\|EnsemblGenome=AMTR_s00041p00113690\|UniProtKB=W1PYF9	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_97G00160\|UniProtKB=A0A0K9NJW0	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma11_g15960\|UniProtKB=A0A804L8C7	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma04_g23790\|UniProtKB=A0A804IT60	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_037135mg\|UniProtKB=K4AE28	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3001G532800\|UniProtKB=C5X118	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb404000\|UniProtKB=B4FCS1	Zea mays	O
BRADI\|EnsemblGenome=BRADI_1g77520v3\|UniProtKB=I1HAJ1	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.4HG0416540\|UniProtKB=A0A8I6X6K6	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS4B02G398900\|UniProtKB=A0A3B6IX94	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS5A02G555800\|UniProtKB=A0A3B6KVD5	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCSU02G114200\|UniProtKB=A0A3B6U657	Triticum aestivum	O
SETIT\|EnsemblGenome=SETIT_010927mg\|UniProtKB=K3Y9N5	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3006G011000\|UniProtKB=C5YBS1	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb419960\|UniProtKB=Q6IVD5	Zea mays	LDO
MAIZE\|EnsemblGenome=Zm00001eb089060\|UniProtKB=C0PP10	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os04g0118900\|UniProtKB=Q7XTJ6	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_3g45070v3\|UniProtKB=I1IA98	Brachypodium distachyon	O
BRADI\|EnsemblGenome=BRADI_5g01430v3\|UniProtKB=I1IVQ1	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.2HG0096530\|UniProtKB=A0A8I6W8X9	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS2A02G009400\|UniProtKB=A0A3B6ANV0	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS2D02G010300\|UniProtKB=A0A3B6D496	Triticum aestivum	LDO
NELNU\|Gene=LOC104604712\|UniProtKB=A0A1U8AIH6	Nelumbo nucifera	O
NELNU\|Gene=LOC104594166\|UniProtKB=A0A1U7ZLR8	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110786595\|UniProtKB=A0A9R0ICW7	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr04g0181851\|UniProtKB=A0A251V1V3	Helianthus annuus	O
HELAN\|EnsemblGenome=HanXRQr2_Chr06g0247141\|UniProtKB=A0A251UHM3	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C300156490\|UniProtKB=A0A9R1XRG5	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a012753mg\|UniProtKB=A0A022QY30	Erythranthe guttata	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400000239\|UniProtKB=M0ZH53	Solanum tuberosum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400018875\|UniProtKB=M1BMM1	Solanum tuberosum	O
SOLLC\|EnsemblGenome=Solyc01g096180.3\|UniProtKB=A0A3Q7EMP5	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107778870\|UniProtKB=A0A1S3YRW2	Nicotiana tabacum	O
TOBAC\|Gene=LOC107801279\|UniProtKB=A0A1S4ATQ5	Nicotiana tabacum	O
TOBAC\|Gene=LOC107797842\|UniProtKB=A0A1S4AHX1	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi15g00926\|UniProtKB=D7UCX3	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_E00030\|UniProtKB=A0A059BZV9	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=GSBRNA2T00073169001\|UniProtKB=A0A078HV25	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra004523\|UniProtKB=M4CJY9	Brassica campestris	LDO
ARATH\|TAIR=locus=2039975\|UniProtKB=Q9ZPX8	Arabidopsis thaliana	O
ARATH\|TAIR=locus=2079502\|UniProtKB=P92964	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107916625\|UniProtKB=A0A1U8KG30	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107945907\|UniProtKB=A0A1U8N991	Gossypium hirsutum	O
GOSHI\|Gene=LOC107948157\|UniProtKB=A0A1U8NGL0	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_005096\|UniProtKB=A0A061E050	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g024354mg\|UniProtKB=A0A067HEX7	Citrus sinensis	LDO
MANES\|EnsemblGenome=MANES_01G243200\|UniProtKB=A0A251LVE1	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0715980\|UniProtKB=B9SBD0	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_07G053200\|UniProtKB=I1KHT0	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_16G022300\|UniProtKB=I1MKG5	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_8g027190\|UniProtKB=G7LAU9	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr07_08990\|UniProtKB=A0A2I4E606	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_7G239560\|UniProtKB=A0A0A0K5S0	Cucumis sativus	O
CUCSA\|EnsemblGenome=Csa_3G119350\|UniProtKB=A0A0A0L8H4	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_2G193200\|UniProtKB=A0A251QJD3	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_124209\|UniProtKB=D8ST57	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_82477\|UniProtKB=D8R2K8	Selaginella moellendorffii	O
PHYPA\|EnsemblGenome=Pp3c16_1000\|UniProtKB=A0A2K1J6M3	Physcomitrella patens	O
MARPO\|EnsemblGenome=MARPO_0186s0008\|UniProtKB=A0A2R6W1I2	Marchantia polymorpha	O
KLENI\|Gene_ORFName=KFL_009030030\|UniProtKB=A0A1Y1IUU2	Klebsormidium nitens	O