PANTHER Gene Information

Gene Symbol(s):

POPTR_015G135800

Organism:

Populus trichocarpa

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Gene Name:

RRM domain-containing protein

Gene ID:

POPTR_015G135800v3

Protein ID:

U5FQF5

Persistent Id:

PTN002365199

Alternate Ids:

XP_006374642(refSeq)	7454468(GeneID)
PNT02004(EMBL-CDS)	566207492(GI)
POPTR_015G135800v3(Ensembl)	U5FQF5(Synonym)
U5FQF5_POPTR(UniProtKB-ID)	CM009304(EMBL)
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PANTHER Classification

PANTHER Family:	SERINE/ARGININE RICH SPLICING FACTOR (PTHR23147)
PANTHER Subfamily:	RNA-BINDING PROTEIN RNP-1 (PTHR23147:SF270)
PANTHER GO-slim Molecular Function:	RNA binding
PANTHER GO-slim Biological Process:	mRNA splicing, via spliceosome
PANTHER GO-slim Cellular Component:	nuclear speck
PANTHER protein class:	RNA splicing factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	RNA binding
GO BP Complete:	primary miRNA processing
GO CC Complete:	nuclear speck

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=9901\|UniProtKB=Q9BWF3	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000044792.1\|UniProtKB=A0A2I3SJ02	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000043023.1\|UniProtKB=A0A2I2YPQ6	Gorilla gorilla gorilla	O
MOUSE\|MGI=MGI=1100865\|UniProtKB=Q8C7Q4	Mus musculus	O
BOVIN\|Ensembl=ENSBTAG00000031688\|UniProtKB=Q3MHX3	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000058325.1\|UniProtKB=A0A8W4FIS0	Sus scrofa	O
FELCA\|Ensembl=ENSFCAG00000029651.4\|UniProtKB=A0A2I2U7A9	Felis catus	O
MONDO\|Ensembl=ENSMODG00000041004.1\|UniProtKB=A0A5F8H5H9	Monodelphis domestica	O
HUMAN\|HGNC=28842\|UniProtKB=Q9BQ04	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000003935.3\|UniProtKB=H2Q476	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000025398.2\|UniProtKB=A0A2I2Y471	Gorilla gorilla gorilla	O
GORGO\|Ensembl=ENSGGOG00000011698.3\|UniProtKB=G3R7Q9	Gorilla gorilla gorilla	LDO
MOUSE\|MGI=MGI=1913954\|UniProtKB=Q8VE92	Mus musculus	LDO
RAT\|RGD=1359343\|UniProtKB=Q64LC9	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000000423.5\|UniProtKB=Q2KIV3	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000038304\|UniProtKB=Q06AT9	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000022987.4\|UniProtKB=F6VSG0	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000007394.5\|UniProtKB=A0A2I2URJ9	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845012293.1\|UniProtKB=A0A8I3NC39	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000008056.4\|UniProtKB=F6Z9I7	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000003143.3\|UniProtKB=A0A6I8NML9	Ornithorhynchus anatinus	LDO
ORNAN\|Ensembl=ENSOANG00000037726.1\|UniProtKB=A0A6I8PQA1	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010000581.1\|UniProtKB=A0A8V0X364	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000007805.4\|UniProtKB=H9GD18	Anolis carolinensis	LDO
ORYLA\|Ensembl=ENSORLG00000024749.1\|UniProtKB=H2M7R2	Oryzias latipes	O
ORYLA\|Ensembl=ENSORLG00000011589.2\|UniProtKB=A0A3B3H610	Oryzias latipes	O
DANRE\|Gene=rbm4.3\|UniProtKB=A0A8M2BJM8	Danio rerio	O
LEPOC\|Ensembl=ENSLOCG00000002755.1\|UniProtKB=W5M4D4	lepisosteus oculatus	O
ORYLA\|Ensembl=ENSORLG00000012496.2\|UniProtKB=H2MAT6	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-030131-3019\|UniProtKB=Q803F7	Danio rerio	O
DANRE\|ZFIN=ZDB-GENE-030131-3902\|UniProtKB=Q6IQ97	Danio rerio	LDO
HUMAN\|HGNC=14219\|UniProtKB=Q96PK6	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000003934.6\|UniProtKB=G2HHY2	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000014455.3\|UniProtKB=G3R212	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000020363.4\|UniProtKB=G7NC47	Macaca mulatta	O
MOUSE\|MGI=MGI=1929092\|UniProtKB=Q8C2Q3	Mus musculus	O
RAT\|RGD=620542\|UniProtKB=M0R9Q1	Rattus norvegicus	O
BOVIN\|Ensembl=ENSBTAG00000001225.4\|UniProtKB=F1MI47	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000038008.3\|UniProtKB=A0A287B401	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000022859.4\|UniProtKB=A0A9L0SZX2	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000007392.5\|UniProtKB=M3W7N2	Felis catus	O
CANLF\|Ensembl=ENSCAFG00845012400.1\|UniProtKB=A0A8I3RX26	Canis lupus familiaris	O
ORNAN\|Ensembl=ENSOANG00000042996.1\|UniProtKB=A0A6I8PBY1	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010000584.1\|UniProtKB=A0A8V0X366	Gallus gallus	O
ANOCA\|Ensembl=ENSACAG00000012696.4\|UniProtKB=H9GJ57	Anolis carolinensis	O
XENLA\|Gene=rbm4.L\|UniProtKB=A0A1L8GJI3	Xenopus laevis	O
DANRE\|ZFIN=ZDB-GENE-040426-1811\|UniProtKB=Q6P0G2	Danio rerio	O
CIOIN\|Ensembl=ENSCING00000008757.2\|UniProtKB=F6T0B7	Ciona intestinalis	O
CIOIN\|Ensembl=ENSCING00000020584.1\|UniProtKB=H2XR28	Ciona intestinalis	O
CIOIN\|Ensembl=ENSCING00000012786.2\|UniProtKB=F6XCS0	Ciona intestinalis	LDO
CAEEL\|WormBase=WBGene00004384\|UniProtKB=Q10667	Caenorhabditis elegans	LDO
CAEBR\|Gene_ORFName=CBG23404\|UniProtKB=A8Y3Z9	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00103614\|UniProtKB=A0A2A6CTD0	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0011640\|UniProtKB=Q94901	Drosophila melanogaster	O
TRICA\|EnsemblGenome=TC006476\|UniProtKB=D6WX34	Tribolium castaneum	O
ANOGA\|EnsemblGenome=AGAP002390\|UniProtKB=Q7QC08	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC009189\|UniProtKB=D6WTA3	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_98603\|UniProtKB=E9G592	Daphnia pulex	LDO
HELRO\|EnsemblGenome=HelroG193900\|UniProtKB=T1FVG6	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g141804\|UniProtKB=A7T1I7	Nematostella vectensis	LDO
CANAL\|CGD=CAL0000175616\|UniProtKB=A0A1D8PLU0	Candida albicans	LDO
EMENI\|EnsemblGenome=ANIA_05802\|UniProtKB=Q5B0X8	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_2G07410\|UniProtKB=Q4X276	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU03990\|UniProtKB=V5INA7	Neurospora crassa	LDO
SCLS1\|Gene_ORFName=SS1G_10587\|UniProtKB=A7EZ21	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_09484\|UniProtKB=Q0UFI0	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPAC222.18\|UniProtKB=C6Y4C0	Schizosaccharomyces pombe	LDO
USTMA\|EnsemblGenome=UMAG_02469\|UniProtKB=A0A0D1C969	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_09124\|UniProtKB=E3KG75	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_88044\|UniProtKB=F4P1C1	Batrachochytrium dendrobatidis	LDO
PARTE\|EnsemblGenome=GSPATT00017568001\|UniProtKB=A0DJK7	Paramecium tetraurelia	LDO
PARTE\|EnsemblGenome=GSPATT00001999001\|UniProtKB=A0D7E0	Paramecium tetraurelia	LDO
PARTE\|EnsemblGenome=GSPATT00005106001\|UniProtKB=A0BP90	Paramecium tetraurelia	LDO
PHYRM\|Gene=H3H078_PHYRM\|UniProtKB=H3H078	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_16g674250v5\|UniProtKB=A0A2K3CVI3	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00069p00132220\|UniProtKB=U5D163	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_207G00090\|UniProtKB=A0A0K9PNG6	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma01_g09510\|UniProtKB=A0A804HS52	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma05_g10230\|UniProtKB=A0A804J2X7	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma03_g12090\|UniProtKB=A0A804IB62	Musa acuminata subsp. malaccensis	LDO
MUSAM\|EnsemblGenome=Ma04_g23680\|UniProtKB=A0A804IT45	Musa acuminata subsp. malaccensis	O
SETIT\|EnsemblGenome=SETIT_017971mg\|UniProtKB=K3YUM5	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3004G020700\|UniProtKB=C5XT29	Sorghum bicolor	LDO
ORYSJ\|EnsemblGenome=Os02g0122800\|UniProtKB=Q6Z725	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_3g02226v3\|UniProtKB=A0A0Q3F045	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.6HG0548840\|UniProtKB=A0A8I7BB18	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS6B02G088500\|UniProtKB=A0A3B6PGK0	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCSU02G119700\|UniProtKB=A0A3B6U1M4	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6A02G065400\|UniProtKB=A0A3B6NL33	Triticum aestivum	LDO
NELNU\|Gene_ORFName=HUJ06_017958\|UniProtKB=A0A1U8BB17	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110782463\|UniProtKB=A0A9R0I6D3	Spinacia oleracea	LDO
HELAN\|Gene_ORFName=HanXRQr2_Chr05g0210451\|UniProtKB=A0A9K3IZ40	Helianthus annuus	O
HELAN\|Gene_ORFName=HanXRQr2_Chr13g0590911\|UniProtKB=A0A9K3EHI8	Helianthus annuus	LDO
HELAN\|Gene_ORFName=HannXRQ_Chr13g0405611\|UniProtKB=A0A251SSE8	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C800392240\|UniProtKB=A0A9R1WZA9	Lactuca sativa	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400014266\|UniProtKB=M1B4N1	Solanum tuberosum	LDO
TOBAC\|Gene=LOC107770246\|UniProtKB=A0A1S3XYU6	Nicotiana tabacum	O
TOBAC\|Gene=LOC107779376\|UniProtKB=A0A1S3YT22	Nicotiana tabacum	O
TOBAC\|Gene=LOC107794073\|UniProtKB=A0A1S4A5Y9	Nicotiana tabacum	LDO
VITVI\|Gene_OrderedLocusName=VIT_16s0100g00450\|UniProtKB=F6HP66	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_K00223\|UniProtKB=A0A058ZX59	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=DARMORV10_C01P21060.1\|UniProtKB=A0A078IZ88	Brassica napus	O
BRACM\|EnsemblGenome=Bra013895\|UniProtKB=M4DBN5	Brassica campestris	O
BRANA\|Gene_ORFName=DARMORV10_A03P15910.1\|UniProtKB=A0A078HLW8	Brassica napus	O
BRANA\|Gene_ORFName=DARMORV10_C03P18710.1\|UniProtKB=A0A078H714	Brassica napus	O
BRACM\|EnsemblGenome=Bra029146\|UniProtKB=M4EK29	Brassica campestris	O
BRANA\|Gene_ORFName=GSBRNA2T00006795001\|UniProtKB=A0A078IR43	Brassica napus	LDO
BRANA\|Gene_ORFName=GSBRNA2T00013332001\|UniProtKB=A0A078IXL1	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra010459\|UniProtKB=M4D1V9	Brassica campestris	LDO
ARATH\|TAIR=locus=2173088\|UniProtKB=P92966	Arabidopsis thaliana	O
ARATH\|TAIR=locus=2131864\|UniProtKB=P92965	Arabidopsis thaliana	LDO
THECC\|EnsemblGenome=TCM_015090\|UniProtKB=A0A061G7R5	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g014331mg\|UniProtKB=A0A067F9E8	Citrus sinensis	LDO
MANES\|EnsemblGenome=MANES_06G143500\|UniProtKB=A0A2C9VS80	Manihot esculenta	LDO
SOYBN\|EnsemblGenome=GLYMA_10G239100\|UniProtKB=C6TAB8	Glycine max	LDO
SOYBN\|EnsemblGenome=GLYMA_20G155400\|UniProtKB=I1NGP9	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_1g101520\|UniProtKB=G7IAR3	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr01_11890\|UniProtKB=A0A2I4FGE3	Juglans regia	O
JUGRE\|EnsemblGenome=Jr10_08540\|UniProtKB=A0A2I4EMW6	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_3G063660\|UniProtKB=A0A0A0L7I3	Cucumis sativus	O
CUCSA\|EnsemblGenome=Csa_3G063650\|UniProtKB=A0A0A0L2A0	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_2G290100\|UniProtKB=A0A251QRA0	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_124209\|UniProtKB=D8ST57	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_82477\|UniProtKB=D8R2K8	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c16_1000\|UniProtKB=A0A2K1J6M3	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0186s0008\|UniProtKB=A0A2R6W1I2	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_009030030\|UniProtKB=A0A1Y1IUU2	Klebsormidium nitens	LDO