PANTHER Gene Information

Gene Symbol(s):

POPTR_016G020100

Organism:

Populus trichocarpa

View Gene in Tree

Tree

Gene Name:

mRNA decay factor PAT1 domain-containing protein

Gene ID:

POPTR_016G020100v3

Protein ID:

A0A2K1X9F5

Persistent Id:

PTN002329511

Alternate Ids:

PNS97399(EMBL-CDS)	A0A2K1X9F5_POPTR(UniProtKB-ID)
POPTR_016G020100v3(Ensembl)	CM009305(EMBL)
A0A2K1X9F5(Synonym)
Show All

PANTHER Classification

PANTHER Family:	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 (PTHR21551)
PANTHER Subfamily:	PROTEIN PAT1 HOMOLOG 2 (PTHR21551:SF24)
PANTHER GO-slim Molecular Function:	RNA binding
PANTHER GO-slim Biological Process:	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay P-body assembly RNA decapping
PANTHER GO-slim Cellular Component:	P-body
PANTHER protein class:	RNA processing factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	RNA binding
GO BP Complete:	deadenylation-dependent decapping of nuclear-transcribed mRNA, P-body assembly
GO CC Complete:	P-body

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
PANTR\|Ensembl=ENSPTRG00000046558.1\|UniProtKB=A0A2I3SYC0	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000027993.2\|UniProtKB=A0A2I2ZT75	Gorilla gorilla gorilla	O
HUMAN\|HGNC=26721\|UniProtKB=Q86TB9	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000003697.4\|UniProtKB=A0A2I3RIF4	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000004335.3\|UniProtKB=G3QNX6	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000017287.4\|UniProtKB=A0A5F7ZUV1	Macaca mulatta	O
MOUSE\|MGI=MGI=2147679\|UniProtKB=Q3TC46	Mus musculus	O
RAT\|RGD=1305514\|UniProtKB=B5DF93	Rattus norvegicus	O
BOVIN\|Ensembl=ENSBTAG00000005913.6\|UniProtKB=F1N1E7	Bos taurus	O
PIG\|Ensembl=ENSSSCG00005038068.1\|UniProtKB=A0A8D0YAJ6	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000011411.4\|UniProtKB=F6ZK93	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000015573.6\|UniProtKB=M3WMV5	Felis catus	O
CANLF\|Ensembl=ENSCAFG00845016925.1\|UniProtKB=A0A8I3S2D6	Canis lupus familiaris	O
MONDO\|Ensembl=ENSMODG00000020201.4\|UniProtKB=F7G829	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000011117.3\|UniProtKB=A0A6I8NKB7	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010020343.1\|UniProtKB=A0A8V0ZKB8	Gallus gallus	O
ANOCA\|Ensembl=ENSACAG00000006607.3\|UniProtKB=A0A803SYA0	Anolis carolinensis	O
XENLA\|Gene=patl1\|UniProtKB=Q32N92	Xenopus laevis	O
DANRE\|ZFIN=ZDB-GENE-070209-83\|UniProtKB=A2RRV3	Danio rerio	O
LEPOC\|Ensembl=ENSLOCG00000000717.1\|UniProtKB=W5LXE5	lepisosteus oculatus	O
HUMAN\|HGNC=33630\|UniProtKB=C9JE40	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000041536.2\|UniProtKB=H2RHS9	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000025923.2\|UniProtKB=G3SF59	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000014294.4\|UniProtKB=F7BSR3	Macaca mulatta	O
MOUSE\|MGI=MGI=1914828\|UniProtKB=A2ARM1	Mus musculus	O
RAT\|RGD=1307887\|UniProtKB=D3Z954	Rattus norvegicus	O
BOVIN\|Ensembl=ENSBTAG00000001558.4\|UniProtKB=F1N6C5	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000061749.1\|UniProtKB=A0A5G2RAM5	Sus scrofa	O
CANLF\|Ensembl=ENSCAFG00845028566.1\|UniProtKB=A0A8I3QGZ1	Canis lupus familiaris	O
MONDO\|Ensembl=ENSMODG00000017690.4\|UniProtKB=F7G5L3	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000001538.2\|UniProtKB=F7D1M1	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010023271.1\|UniProtKB=A0A8V0ZVN2	Gallus gallus	O
ANOCA\|Ensembl=ENSACAG00000006951.4\|UniProtKB=H9GC45	Anolis carolinensis	O
XENLA\|Gene=patl2.L\|UniProtKB=A0A8J0U3S6	Xenopus laevis	O
XENLA\|Gene=patl2\|UniProtKB=Q4V7K4	Xenopus laevis	O
XENTR\|Xenbase=XB-GENE-5892251\|UniProtKB=B5DEB9	Xenopus tropicalis	O
ORYLA\|Ensembl=ENSORLG00000005780.2\|UniProtKB=H2LMJ0	Oryzias latipes	O
DANRE\|ZFIN=ZDB-GENE-121214-350\|UniProtKB=E7FAC4	Danio rerio	O
CIOIN\|Ensembl=ENSCING00000021535.1\|UniProtKB=H2XSE6	Ciona intestinalis	O
BRAFL\|Gene=LOC118406584\|UniProtKB=A0A9J7HQI3	Branchiostoma floridae	O
STRPU\|EnsemblGenome=LOC593235\|UniProtKB=A0A7M7T012	Strongylocentrotus purpuratus	O
CAEEL\|WormBase=WBGene00009661\|UniProtKB=Q20374	Caenorhabditis elegans	O
CAEBR\|Gene_ORFName=CBG03125\|UniProtKB=A8WSQ9	Caenorhabditis briggsae	O
PRIPA\|EnsemblGenome=WBGene00112197\|UniProtKB=A0A2A6B5R5	Pristionchus pacificus	O
DROME\|FlyBase=FBgn0266053\|UniProtKB=Q9VEN9	Drosophila melanogaster	O
ANOGA\|EnsemblGenome=AGAP007440\|UniProtKB=A7URD4	Anopheles gambiae	O
ANOGA\|EnsemblGenome=AGAP009631\|UniProtKB=A0A1S4H1P3	Anopheles gambiae	O
TRICA\|EnsemblGenome=TC015163\|UniProtKB=D2A5J1	Tribolium castaneum	O
DAPPU\|EnsemblGenome=DAPPUDRAFT_300176\|UniProtKB=E9FRH5	Daphnia pulex	O
IXOSC\|EnsemblGenome=ISCW003914\|UniProtKB=B7PJS1	Ixodes scapularis	O
HELRO\|EnsemblGenome=HelroG188811\|UniProtKB=T1FQE1	helobdella robusta	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g244471\|UniProtKB=A7SDA7	Nematostella vectensis	O
TRIAD\|EnsemblGenome=TriadG54328\|UniProtKB=B3RRQ6	Trichoplax adhaerens	O
MONBE\|EnsemblGenome=MONBRDRAFT_33059\|UniProtKB=A9V3A1	Monosiga brevicollis	O
YEAST\|SGD=S000000673\|UniProtKB=P25644	Saccharomyces cerevisiae	O
EREGS\|EnsemblGenome=AGOS_AGL220W\|UniProtKB=Q751C6	Eremothecium gossypii	O
CANAL\|CGD=CAL0000183191\|UniProtKB=A0A1D8PM60	Candida albicans	O
YARLI\|EnsemblGenome=YALI0_E19514g\|UniProtKB=Q6C5B3	Yarrowia lipolytica	O
EMENI\|EnsemblGenome=ANIA_02751\|UniProtKB=Q5B9M9	Emericella nidulans	O
ASPFU\|EnsemblGenome=AFUA_5G10770\|UniProtKB=Q4WV45	Neosartorya fumigata	O
NEUCR\|EnsemblGenome=NCU06540\|UniProtKB=Q7S9I6	Neurospora crassa	O
SCLS1\|EnsemblGenome=SS1G_03651\|UniProtKB=A7EEB1	Sclerotinia sclerotiorum	O
PHANO\|EnsemblGenome=SNOG_08695\|UniProtKB=Q0UHR9	Phaeosphaeria nodorum	O
SCHPO\|PomBase=SPBC19G7.10c\|UniProtKB=O42958	Schizosaccharomyces pombe	O
SCHJY\|EnsemblGenome=SJAG_02213\|UniProtKB=B6K1V3	Schizosaccharomyces japonicus	O
CRYNJ\|EnsemblGenome=CNA06430\|UniProtKB=Q5KNH9	Cryptococcus neoformans	O
USTMA\|EnsemblGenome=UMAG_03967\|UniProtKB=A0A0D1DW69	Ustilago maydis	O
PUCGT\|EnsemblGenome=PGTG_04057\|UniProtKB=E3K1C6	Puccinia graminis	O
BATDJ\|Gene_ORFName=BATDEDRAFT_34569\|UniProtKB=F4NYT2	Batrachochytrium dendrobatidis	O
DICDI\|dictyBase=DDB_G0268244\|UniProtKB=Q55F60	Dictyostelium discoideum	O
DICPU\|EnsemblGenome=DICPUDRAFT_57424\|UniProtKB=F0ZVV4	Dictyostelium purpureum	O
THAPS\|EnsemblGenome=THAPSDRAFT_22907\|UniProtKB=B8C3U0	Thalassiosira pseudonana	O
PHYRM\|Gene=H3H4G6_PHYRM\|UniProtKB=H3H4G6	Phytophthora ramorum	O
CHLRE\|EnsemblGenome=CHLRE_06g278203v5\|UniProtKB=A0A2K3DP46	Chlamydomonas reinhardtii	O
AMBTC\|EnsemblGenome=AMTR_s00155p00028780\|UniProtKB=W1PCN3	Amborella trichopoda	O
ZOSMR\|Gene_ORFName=ZOSMA_37G01450\|UniProtKB=A0A0K9P5I4	Zostera marina	O
ZOSMR\|Gene_ORFName=ZOSMA_30G01170\|UniProtKB=A0A0K9PA36	Zostera marina	O
MUSAM\|EnsemblGenome=Ma09_g09680\|UniProtKB=A0A804KHT4	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma05_g02180\|UniProtKB=A0A804IZX3	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma04_g38410\|UniProtKB=A0A804IYJ2	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma06_g33120\|UniProtKB=A0A804JN48	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma06_g21290\|UniProtKB=A0A804JIQ2	Musa acuminata subsp. malaccensis	O
MUSAM\|EnsemblGenome=Ma09_g31090\|UniProtKB=A0A804KQP9	Musa acuminata subsp. malaccensis	O
SETIT\|EnsemblGenome=SETIT_000799mg\|UniProtKB=K3XFY0	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3003G011300\|UniProtKB=A0A1B6Q0S4	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb339010\|UniProtKB=K7VRB6	Zea mays	O
SETIT\|EnsemblGenome=SETIT_016320mg\|UniProtKB=K3YPX8	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3004G131300\|UniProtKB=A0A194YPF1	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb237040\|UniProtKB=C0PDG9	Zea mays	O
ORYSJ\|EnsemblGenome=Os02g0295700\|UniProtKB=Q6K5B7	Oryza sativa	O
ORYSJ\|EnsemblGenome=Os02g0294700\|UniProtKB=A0A0P0VHV7	Oryza sativa	O
BRADI\|EnsemblGenome=BRADI_1g56960v3\|UniProtKB=A0A0Q3S6S6	Brachypodium distachyon	O
BRADI\|EnsemblGenome=BRADI_4g36450v3\|UniProtKB=I1IS99	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.5HG0500220\|UniProtKB=A0A8I6XIR6	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS5B02G329500\|UniProtKB=A0A3B6LR73	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS5A02G329400\|UniProtKB=A0A3B6KMP5	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS5D02G335200\|UniProtKB=A0A3B6MW26	Triticum aestivum	O
SETIT\|EnsemblGenome=SETIT_021241mg\|UniProtKB=K3Z3X3	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3009G193300\|UniProtKB=C5Z0U7	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb292520\|UniProtKB=A0A1D6M803	Zea mays	O
BRADI\|EnsemblGenome=BRADI_2g20210v3\|UniProtKB=I1HHS2	Brachypodium distachyon	O
BRADI\|EnsemblGenome=BRADI_2g20220v3\|UniProtKB=I1HHS3	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.1HG0078260\|UniProtKB=A0A8I6X8N7	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS1D02G332700\|UniProtKB=A0A3B6A054	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS1B02G343900\|UniProtKB=A0A3B5Z1I2	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS1A02G330300\|UniProtKB=A0A3B5Y407	Triticum aestivum	O
SETIT\|EnsemblGenome=SETIT_000338mg\|UniProtKB=K3XEM1	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3003G309200\|UniProtKB=C5XKZ0	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb152050\|UniProtKB=C0HFJ2	Zea mays	O
ORYSJ\|EnsemblGenome=Os02g0517300\|UniProtKB=Q64M88	Oryza sativa	O
ORYSJ\|EnsemblGenome=Os01g0769000\|UniProtKB=Q5ZAQ3	Oryza sativa	O
BRADI\|EnsemblGenome=BRADI_2g51080v3\|UniProtKB=I1HS15	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.3HG0291710\|UniProtKB=M0Y406	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS3D02G303700\|UniProtKB=A0A3B6GW73	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS3A02G298300\|UniProtKB=A0A3B6EMZ5	Triticum aestivum	O
NELNU\|Gene=LOC104587863\|UniProtKB=A0A1U7Z9V6	Nelumbo nucifera	O
NELNU\|Gene=LOC104587871\|UniProtKB=A0A1U7Z097	Nelumbo nucifera	O
SPIOL\|Gene=LOC110796286\|UniProtKB=A0A9R0IZB4	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr12g0537161\|UniProtKB=A0A251S042	Helianthus annuus	O
HELAN\|EnsemblGenome=HanXRQr2_Chr13g0567101\|UniProtKB=A0A251SNG7	Helianthus annuus	O
LACSA\|Gene_ORFName=LSAT_V11C800402180\|UniProtKB=A0A9R1WYE7	Lactuca sativa	O
HELAN\|EnsemblGenome=HanXRQr2_Chr06g0248491\|UniProtKB=A0A251UHB3	Helianthus annuus	O
HELAN\|Gene_ORFName=HanXRQr2_Chr17g0789381\|UniProtKB=A0A9K3DF94	Helianthus annuus	LDO
HELAN\|Gene_ORFName=HannXRQ_Chr04g0099291\|UniProtKB=A0A251UYF4	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C300115240\|UniProtKB=A0A9R1XQF9	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a023840mg\|UniProtKB=A0A022RTT8	Erythranthe guttata	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a001457mg\|UniProtKB=A0A022RSU9	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_08661\|UniProtKB=A0A1U8F040	Capsicum annuum	O
SOLLC\|EnsemblGenome=Solyc12g017260.2\|UniProtKB=A0A3Q7J6B0	Solanum lycopersicum	O
TOBAC\|Gene=LOC107780052\|UniProtKB=A0A1S3YV93	Nicotiana tabacum	O
TOBAC\|Gene=LOC107804133\|UniProtKB=A0A1S4B3E9	Nicotiana tabacum	O
CAPAN\|EnsemblGenome=T459_14680\|UniProtKB=A0A2G2ZIA2	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400017705\|UniProtKB=M1BHZ5	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc05g016240.3\|UniProtKB=A0A3Q7GHQ9	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107794986\|UniProtKB=A0A1S4A8X7	Nicotiana tabacum	O
TOBAC\|Gene=LOC107764136\|UniProtKB=A0A1S3XEG8	Nicotiana tabacum	LDO
CAPAN\|EnsemblGenome=T459_24058\|UniProtKB=A0A2G2YU66	Capsicum annuum	O
SOLTU\|EnsemblGenome=PGSC0003DMG401028807\|UniProtKB=M1CT62	Solanum tuberosum	O
SOLLC\|EnsemblGenome=Solyc12g006420.2\|UniProtKB=A0A3Q7JRE4	Solanum lycopersicum	O
TOBAC\|Gene=LOC107796298\|UniProtKB=A0A1S4ACZ2	Nicotiana tabacum	O
TOBAC\|Gene=LOC107781173\|UniProtKB=A0A1S3YYQ0	Nicotiana tabacum	O
TOBAC\|Gene=LOC107811764\|UniProtKB=A0A1S4BTU1	Nicotiana tabacum	O
TOBAC\|Gene=LOC107762340\|UniProtKB=A0A1S3X8F3	Nicotiana tabacum	O
VITVI\|Gene_OrderedLocusName=VIT_03s0017g00990\|UniProtKB=F6HTJ0	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_K01336\|UniProtKB=A0A059A2M0	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=DARMORV10_C01P41980.1\|UniProtKB=A0A078I8A9	Brassica napus	O
BRANA\|Gene_ORFName=DARMORV10_A01P32900.1\|UniProtKB=A0A078HNU6	Brassica napus	O
BRACM\|EnsemblGenome=Bra023839\|UniProtKB=M4E4Y5	Brassica campestris	O
BRANA\|Gene_ORFName=DARMORV10_C05P41090.1\|UniProtKB=A0A078HHR1	Brassica napus	O
BRANA\|Gene_ORFName=GSBRNA2T00048367001\|UniProtKB=A0A078F853	Brassica napus	O
BRACM\|EnsemblGenome=Bra031345\|UniProtKB=M4ERC1	Brassica campestris	O
ARATH\|TAIR=locus=2091618\|UniProtKB=F4J077	Arabidopsis thaliana	O
BRANA\|Gene_ORFName=DARMORV10_C01P28080.1\|UniProtKB=A0A078IZY8	Brassica napus	O
BRANA\|Gene_ORFName=DARMORV10_A01P22580.1\|UniProtKB=A0A078ILP6	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra036918\|UniProtKB=M4F758	Brassica campestris	LDO
ARATH\|TAIR=locus=2129565\|UniProtKB=Q94C98	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107919862\|UniProtKB=A0A1U8KQK4	Gossypium hirsutum	O
GOSHI\|Gene=LOC107912671\|UniProtKB=A0A1U8K1M4	Gossypium hirsutum	O
GOSHI\|Gene=LOC107954859\|UniProtKB=A0A1U8P717	Gossypium hirsutum	O
GOSHI\|Gene=LOC107948554\|UniProtKB=A0A1U8NID1	Gossypium hirsutum	O
GOSHI\|Gene=LOC107923959\|UniProtKB=A0A1U8L4X4	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_002009\|UniProtKB=A0A061DL88	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g0038252mg\|UniProtKB=A0A067FDX8	Citrus sinensis	LDO
MANES\|EnsemblGenome=MANES_08G065700\|UniProtKB=A0A2C9VE04	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0673440\|UniProtKB=B9S3M6	Ricinus communis	LDO
JUGRE\|EnsemblGenome=Jr01_23980\|UniProtKB=A0A2I4EXG2	Juglans regia	LDO
JUGRE\|Gene=LOC108993576\|UniProtKB=A0A6P9ELZ2	Juglans regia	O
CUCSA\|EnsemblGenome=Csa_4G062390\|UniProtKB=A0A0A0KVF1	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_3G188000\|UniProtKB=A0A251Q2C8	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_165728\|UniProtKB=D8QW64	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_112306\|UniProtKB=D8SAQ3	Selaginella moellendorffii	O
PHYPA\|EnsemblGenome=Pp3c24_12870\|UniProtKB=A0A2K1IGL5	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c8_20970\|UniProtKB=A0A2K1K875	Physcomitrella patens	O
MARPO\|EnsemblGenome=MARPO_0070s0077\|UniProtKB=A0A2R6WP34	Marchantia polymorpha	O
KLENI\|Gene_ORFName=KFL_003770140\|UniProtKB=A0A1Y1I9Z8	Klebsormidium nitens	O