PANTHER Gene Information

Gene Symbol(s):

THAPSDRAFT_13335

Organism:

Thalassiosira pseudonana

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Gene Name:

U5 small nuclear ribonucleoprotein, RNA helicase (Fragment)

Gene ID:

THAPSDRAFT_13335

Protein ID:

B8C0Y3

Persistent Id:

PTN002774613

Alternate Ids:

XP_002289606(refSeq)	CM000641(EMBL)
7442049(GeneID)	B8C0Y3(Synonym)
EED93143(EMBL-CDS)	220974814(GI)
THAPSDRAFT_13335(Ensembl)	B8C0Y3_THAPS(UniProtKB-ID)
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PANTHER Classification

PANTHER Family:	ATP-DEPENDENT RNA HELICASE DBP3 (PTHR47958)
PANTHER Subfamily:	RNA HELICASE (PTHR47958:SF56)
PANTHER GO-slim Molecular Function:	helicase activity mRNA binding catalytic activity, acting on RNA
PANTHER GO-slim Biological Process:	mRNA splicing, via spliceosome
PANTHER GO-slim Cellular Component:	catalytic step 2 spliceosome
PANTHER protein class:	RNA helicase

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	nucleic acid binding, ATP binding, mRNA binding, helicase activity, hydrolase activity
GO BP Complete:	mRNA splicing, via spliceosome
GO CC Complete:	catalytic step 2 spliceosome, ribonucleoprotein complex

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
PANTR\|Ensembl=ENSPTRG00000051972.1\|UniProtKB=A0A2I3RUL8	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000027979.2\|UniProtKB=G3S6R0	Gorilla gorilla gorilla	O
HUMAN\|HGNC=17347\|UniProtKB=Q9BUQ8	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000004887.3\|UniProtKB=A0A2I3TEH8	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000015252.3\|UniProtKB=G3RGX3	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000008432.4\|UniProtKB=A0A1D5QZ21	Macaca mulatta	LDO
MOUSE\|MGI=MGI=1921601\|UniProtKB=D3Z0M9	Mus musculus	LDO
RAT\|RGD=1308685\|UniProtKB=G3V9M1	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000021810.5\|UniProtKB=A6QLB2	Bos taurus	LDO
HORSE\|Ensembl=ENSECAG00000016681.3\|UniProtKB=F6YGK9	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000000082.5\|UniProtKB=M3VU24	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845023512.1\|UniProtKB=A0A8I3PWD8	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000009975.4\|UniProtKB=H9H6C9	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000039844.1\|UniProtKB=A0A6I8MY99	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010022712.1\|UniProtKB=A0A8V0ZPM1	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000025589.3\|UniProtKB=G1KYR0	Anolis carolinensis	LDO
XENLA\|Gene=ddx23.S\|UniProtKB=A0A1L8H9N0	Xenopus laevis	O
XENLA\|Gene=ddx23.L\|UniProtKB=A0A1L8HHN6	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-986212\|UniProtKB=A0A6I8SPD1	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000012330.3\|UniProtKB=A0A3B3HS72	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-030131-6215\|UniProtKB=Q6P9Z2	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000007385.1\|UniProtKB=W5MKQ1	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000001913.3\|UniProtKB=F7A1V5	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118424020\|UniProtKB=A0A9J7LW44	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC584867\|UniProtKB=A0A7M7P5L6	Strongylocentrotus purpuratus	O
STRPU\|EnsemblGenome=LOC754554\|UniProtKB=A0A7M7PA82	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00017162\|UniProtKB=Q95QN2	Caenorhabditis elegans	LDO
CAEBR\|Gene_ORFName=CBG09074\|UniProtKB=A8X7V2	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00107375\|UniProtKB=A0A8R1UCY6	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0032690\|UniProtKB=Q9VJ74	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP007825\|UniProtKB=A0A1S4GWB4	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC014753\|UniProtKB=D6WJA4	Tribolium castaneum	LDO
IXOSC\|EnsemblGenome=ISCW004825\|UniProtKB=B7PHC6	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG106716\|UniProtKB=T1EE41	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g228991\|UniProtKB=A7RYA5	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG50105\|UniProtKB=B3RQJ1	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_10827\|UniProtKB=A9V7D0	Monosiga brevicollis	LDO
YEAST\|SGD=S000002651\|UniProtKB=P23394	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_AFR452C\|UniProtKB=Q752X1	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000181927\|UniProtKB=Q59W52	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_F28391g\|UniProtKB=Q6C024	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_01634\|UniProtKB=Q5BCU6	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_4G09020\|UniProtKB=Q4WPE9	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU02803\|UniProtKB=Q7SEL0	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_04405\|UniProtKB=A7EGG4	Sclerotinia sclerotiorum	LDO
PHANO\|Gene_ORFName=SNOG_03936\|UniProtKB=Q0UWC8	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPCC63.11\|UniProtKB=Q9Y7T7	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_04230\|UniProtKB=B6K6A2	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CNA06640\|UniProtKB=P0CQ88	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_10666\|UniProtKB=A0A0D1C3B6	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_12914\|UniProtKB=E3KSP4	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_16042\|UniProtKB=F4NZ16	Batrachochytrium dendrobatidis	LDO
ENTH1\|EnsemblGenome=CL6EHI_021440\|UniProtKB=C4M058	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0277857\|UniProtKB=Q54Y81	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_54136\|UniProtKB=F0ZFQ4	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_05_0590\|UniProtKB=Q4QJE3	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb927.7.7300\|UniProtKB=Q57TW7	Trypanosoma brucei	LDO
TRIV3\|Gene_ORFName=TVAG_184440\|UniProtKB=A2E9Y0	Trichomonas vaginalis	LDO
PLAF7\|Gene_ORFName=PF3D7_0518500\|UniProtKB=A0A5K1K868	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00021822001\|UniProtKB=A0E037	Paramecium tetraurelia	LDO
PHYRM\|Gene=H3GWG5_PHYRM\|UniProtKB=H3GWG5	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_13g592150v5\|UniProtKB=A0A2K3D159	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00024p00248520\|UniProtKB=W1PMT1	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_102G00030\|UniProtKB=A0A0K9Q6C8	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma03_g01300\|UniProtKB=A0A804I787	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_034402mg\|UniProtKB=K4A698	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3005G191200\|UniProtKB=A0A1Z5RJD4	Sorghum bicolor	O
SORBI\|EnsemblGenome=SORBI_3001G119900\|UniProtKB=A0A1B6QIK6	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb216520\|UniProtKB=C0HHR1	Zea mays	LDO
MAIZE\|EnsemblGenome=Zm00001eb054650\|UniProtKB=B6UFH0	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os03g0708600\|UniProtKB=Q53RK8	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_2g15606v3\|UniProtKB=A0A0Q3FZE4	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.1HG0009870\|UniProtKB=A0A8I6W419	Hordeum vulgare subsp. vulgare	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.1HG0091260\|UniProtKB=A0A8I6WZM2	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS1B02G445500\|UniProtKB=A0A3B5Z563	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS1A02G415500\|UniProtKB=A0A3B5Y819	Triticum aestivum	O
BRADI\|EnsemblGenome=BRADI_1g11180v3\|UniProtKB=I1GP51	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.4HG0336830\|UniProtKB=A0A8I6XEW6	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS4A02G270200\|UniProtKB=A0A3B6HZU5	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS6B02G364400\|UniProtKB=A0A3B6PSZ0	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS5B02G079300\|UniProtKB=A0A3B6LHH9	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6B02G364300\|UniProtKB=A0A3B6PQ31	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS4D02G041400\|UniProtKB=A0A3B6JFS4	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS4B02G043900\|UniProtKB=A0A3B6ILA1	Triticum aestivum	LDO
NELNU\|Gene=LOC104591903\|UniProtKB=A0A1U7Z9U2	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110803468\|UniProtKB=A0A9R0JAW9	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr12g0555701\|UniProtKB=A0A251T5M2	Helianthus annuus	O
HELAN\|EnsemblGenome=HanXRQr2_Chr15g0708161\|UniProtKB=A0A251SB38	Helianthus annuus	O
HELAN\|EnsemblGenome=HanXRQr2_Chr07g0306881\|UniProtKB=A0A251UF42	Helianthus annuus	O
HELAN\|EnsemblGenome=HanXRQr2_Chr02g0063591\|UniProtKB=A0A251VG90	Helianthus annuus	O
HELAN\|EnsemblGenome=HanXRQr2_Chr05g0217031\|UniProtKB=A0A251UQT3	Helianthus annuus	O
HELAN\|EnsemblGenome=HanXRQr2_Chr04g0179641\|UniProtKB=A0A251V139	Helianthus annuus	O
HELAN\|Gene_ORFName=HanXRQr2_Chr12g0555711\|UniProtKB=A0A9K3HIT1	Helianthus annuus	O
HELAN\|EnsemblGenome=HanXRQr2_Chr06g0254661\|UniProtKB=A0A251UHE3	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C300114190\|UniProtKB=A0A9R1W6U7	Lactuca sativa	O
LACSA\|Gene_ORFName=LSAT_V11C300114180\|UniProtKB=A0A9R1XQ30	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a004308mg\|UniProtKB=A0A022RH80	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_04855\|UniProtKB=A0A2G3A683	Capsicum annuum	O
CAPAN\|EnsemblGenome=T459_05956\|UniProtKB=A0A1U8FUW0	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400009407\|UniProtKB=M1AJX4	Solanum tuberosum	O
SOLLC\|EnsemblGenome=Solyc02g068190.1\|UniProtKB=A0A3Q7F0N6	Solanum lycopersicum	O
SOLTU\|EnsemblGenome=PGSC0003DMG400016720\|UniProtKB=M1BE32	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc02g081290.3\|UniProtKB=A0A3Q7F5J3	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107772873\|UniProtKB=A0A1S3Y6Q8	Nicotiana tabacum	O
TOBAC\|Gene=LOC107769656\|UniProtKB=A0A1S3XWY0	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi03g00001\|UniProtKB=F6I1B2	Vitis vinifera	LDO
VITVI\|Gene_OrderedLocusName=VIT_09s0054g01810\|UniProtKB=F6GYH2	Vitis vinifera	O
EUCGR\|EnsemblGenome=EUGRSUZ_G01988\|UniProtKB=A0A059BE88	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=GSBRNA2T00064589001\|UniProtKB=A0A078HJ47	Brassica napus	LDO
BRANA\|Gene_ORFName=GSBRNA2T00011445001\|UniProtKB=A0A078IV44	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra021872\|UniProtKB=M4DZC5	Brassica campestris	LDO
ARATH\|Gene_OrderedLocusName=At1g28180\|UniProtKB=Q9FZ92	Arabidopsis thaliana	O
ARATH\|TAIR=locus=2057640\|UniProtKB=P93008	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107914725\|UniProtKB=A0A1U8K9P4	Gossypium hirsutum	O
GOSHI\|Gene=LOC107903793\|UniProtKB=A0A1U8J528	Gossypium hirsutum	O
GOSHI\|Gene=LOC107927452\|UniProtKB=A0A1U8LKL4	Gossypium hirsutum	O
GOSHI\|Gene=LOC107934847\|UniProtKB=A0A1U8M7R1	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_020154\|UniProtKB=A0A061EL01	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g038133mg\|UniProtKB=A0A067DEY9	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_015G037200v3\|UniProtKB=A0A2K1XHJ8	Populus trichocarpa	LDO
POPTR\|EnsemblGenome=POPTR_012G045800v3\|UniProtKB=A0A2K1Y8X6	Populus trichocarpa	O
MANES\|EnsemblGenome=MANES_02G198800\|UniProtKB=A0A251LKT9	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_1331440\|UniProtKB=B9S714	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_17G004800\|UniProtKB=I1MQW6	Glycine max	LDO
SOYBN\|EnsemblGenome=GLYMA_07G268900\|UniProtKB=K7L406	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_6g005320\|UniProtKB=G7KQ16	Medicago truncatula	O
MEDTR\|EnsemblGenome=MTR_4g134170\|UniProtKB=A0A072UUE3	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr16_15050\|UniProtKB=A0A2I4GCP0	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_3G257080\|UniProtKB=A0A0A0L7D0	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_8G029000\|UniProtKB=M5VJD4	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_149865\|UniProtKB=D8RTU5	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_11027\|UniProtKB=D8T5B6	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_153756\|UniProtKB=D8QW75	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c2_34920\|UniProtKB=A0A2K1L4A5	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0001s0493\|UniProtKB=A0A2R6XWU2	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_000370230\|UniProtKB=A0A1Y1HRG0	Klebsormidium nitens	LDO
NITMS\|EnsemblGenome=Nmar_1182\|UniProtKB=A9A5S3	Nitrosopumilus maritimus	O
SACS2\|EnsemblGenome=SSO2036\|UniProtKB=Q97WT0	Sulfolobus solfataricus	O
SACS2\|EnsemblGenome=SSO1889\|UniProtKB=Q97X64	Sulfolobus solfataricus	O