PANTHER Gene Information

Gene Symbol(s):

TCM_006169

Organism:

Theobroma cacao

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Tree

Gene Name:

tRNA pseudouridine synthase

Gene ID:

TCM_006169

Protein ID:

A0A061DW68

Persistent Id:

PTN004237032

Alternate Ids:

A0A061DW68(Synonym)	CM001880(EMBL)
TCM_006169(Ensembl)	EOX97059(EMBL-CDS)
A0A061DW68_THECC(UniProtKB-ID)	508705163(GI)
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PANTHER Classification

PANTHER Family:	PSEUDOURIDYLATE SYNTHASE (PTHR11142)
PANTHER Subfamily:	TRNA PSEUDOURIDINE SYNTHASE-LIKE 1 (PTHR11142:SF0)
PANTHER GO-slim Molecular Function:	intramolecular transferase activity
PANTHER GO-slim Biological Process:	pseudouridine synthesis tRNA modification
PANTHER GO-slim Cellular Component:
PANTHER protein class:	lyase

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	RNA binding, pseudouridine synthase activity, isomerase activity, tRNA pseudouridine(38-40) synthase activity
GO BP Complete:	pseudouridine synthesis, tRNA pseudouridine synthesis, tRNA processing
GO CC Complete:	-

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=26914\|UniProtKB=Q8N0Z8	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000000021.4\|UniProtKB=H2PXT5	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000005364.3\|UniProtKB=G3QRJ5	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000016279.3\|UniProtKB=F7GAE4	Macaca mulatta	LDO
MOUSE\|MGI=MGI=3047787\|UniProtKB=A2ADA5	Mus musculus	LDO
RAT\|RGD=1559560\|UniProtKB=A0A8I6A202	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000007619.5\|UniProtKB=F6Q8G9	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000003338.5\|UniProtKB=A0A5G2R9C5	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000006248.4\|UniProtKB=F6ZKP5	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000007617.5\|UniProtKB=M3W815	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845023803.1\|UniProtKB=A0A8I3S3Y3	Canis lupus familiaris	LDO
ORNAN\|Ensembl=ENSOANG00000036340.1\|UniProtKB=A0A6I8NCG8	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010018278.1\|UniProtKB=A0A8V0Z5L6	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000014111.4\|UniProtKB=H9GKP4	Anolis carolinensis	LDO
XENLA\|Gene=pusl1.L\|UniProtKB=A0A8J0SZB2	Xenopus laevis	O
XENLA\|Gene=pusl1\|UniProtKB=Q6GQ53	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-991885\|UniProtKB=F6R4M9	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000016228.2\|UniProtKB=H2MNL1	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-101110-1\|UniProtKB=F1QJL2	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000002210.1\|UniProtKB=W5M2G9	lepisosteus oculatus	LDO
BRAFL\|Gene=LOC118409443\|UniProtKB=A0A9J7HUY0	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC576244\|UniProtKB=A0A7M7NW32	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00022250\|UniProtKB=Q95XD5	Caenorhabditis elegans	LDO
CAEBR\|WormBase=WBGene00027917\|UniProtKB=A8WZY7	Caenorhabditis briggsae	LDO
DROME\|FlyBase=FBgn0083976\|UniProtKB=Q0E8K6	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP009903\|UniProtKB=A0A1S4H2C7	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC012867\|UniProtKB=D6X1B8	Tribolium castaneum	LDO
IXOSC\|EnsemblGenome=ISCW011501\|UniProtKB=B7Q911	Ixodes scapularis	LDO
DICDI\|dictyBase=DDB_G0283061\|UniProtKB=Q54RR6	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_25596\|UniProtKB=F0Z7G4	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_19_1020\|UniProtKB=Q4QDB3	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb10.61.0690\|UniProtKB=Q387U9	Trypanosoma brucei	LDO
PLAF7\|EnsemblGenome=PF3D7_0516300\|UniProtKB=Q8I3U5	Plasmodium falciparum	LDO
AMBTC\|EnsemblGenome=AMTR_s00071p00170380\|UniProtKB=U5DHQ0	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_89G00270\|UniProtKB=A0A0K9NLV7	Zostera marina	LDO
ZOSMR\|Gene_ORFName=ZOSMA_83G00460\|UniProtKB=A0A0K9NNY0	Zostera marina	O
MUSAM\|EnsemblGenome=Ma09_g08040\|UniProtKB=A0A804KH79	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_010324mg\|UniProtKB=K3Y7Y3	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3008G068100\|UniProtKB=C5YTE9	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb138750\|UniProtKB=B6SIS1	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os12g0194800\|UniProtKB=Q2QWH9	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_4g40560v3\|UniProtKB=I1ITQ5	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.5HG0449120\|UniProtKB=A0A8I6XYK0	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS5A02G115900\|UniProtKB=A0A3B6KF18	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCSU02G134800\|UniProtKB=A0A3B6U6V6	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS5B02G120900\|UniProtKB=A0A3B6LIS2	Triticum aestivum	LDO
NELNU\|Gene=LOC104586484\|UniProtKB=A0A1U7YSK7	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110784878\|UniProtKB=A0A9R0JS25	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr09g0375841\|UniProtKB=A0A251TV17	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C900504580\|UniProtKB=A0A9R1WRY8	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a018737mg\|UniProtKB=A0A022QGX6	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_32455\|UniProtKB=A0A2G2Y1K6	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400024892\|UniProtKB=M1CBM9	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc01g103560.3\|UniProtKB=A0A3Q7EPW2	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107792918\|UniProtKB=A0A1S4A205	Nicotiana tabacum	O
TOBAC\|Gene=LOC107770772\|UniProtKB=A0A1S3Y0I8	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi12g02033\|UniProtKB=D7TGT5	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_I02764\|UniProtKB=A0A059ATD2	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=DARMORV10_C08P49260.1\|UniProtKB=A0A078G828	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra019990\|UniProtKB=M4DTZ7	Brassica campestris	O
BRACM\|EnsemblGenome=Bra031684\|UniProtKB=M4ESA6	Brassica campestris	LDO
GOSHI\|Gene=LOC107921089\|UniProtKB=A0A1U8L076	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107925348\|UniProtKB=A0A1U8LDQ2	Gossypium hirsutum	LDO
CITSI\|Gene_ORFName=CISIN_1g016811mg\|UniProtKB=A0A067DDZ6	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_003G008500v3\|UniProtKB=A0A2K2AZQ8	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_07G024000\|UniProtKB=A0A2C9VHY3	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0759480\|UniProtKB=B9SKD4	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_12G167000\|UniProtKB=K7LVD0	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_16G003100\|UniProtKB=I1MJV5	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_2g005830\|UniProtKB=Q1SKV8	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr16_22420\|UniProtKB=A0A2I4DPT3	Juglans regia	O
JUGRE\|EnsemblGenome=Jr13_00520\|UniProtKB=A0A2I4EEJ2	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_5G586020\|UniProtKB=A0A0A0KRX0	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_1G579000\|UniProtKB=A0A251RJT1	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_100819\|UniProtKB=D8RSR7	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_231248\|UniProtKB=D8RCZ2	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c1_13020\|UniProtKB=A0A2K1L813	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0016s0042\|UniProtKB=A0A2R6XFU7	Marchantia polymorpha	LDO
PYRAE\|EnsemblGenome=PAE1142\|UniProtKB=Q8ZXR6	Pyrobaculum aerophilum	LDO
METAC\|EnsemblGenome=MA_0208\|UniProtKB=Q8TU65	Methanosarcina acetivorans	LDO
METJA\|EnsemblGenome=MJ_1675\|UniProtKB=Q59069	Methanocaldococcus jannaschii	LDO
HALSA\|EnsemblGenome=VNG_2003G\|UniProtKB=Q9HNP6	Halobacterium salinarum	LDO
THEKO\|EnsemblGenome=TK0927\|UniProtKB=Q5JI92	Thermococcus kodakaraensis	LDO
CHLAA\|EnsemblGenome=Caur_2398\|UniProtKB=A9WH95	Chloroflexus aurantiacus	LDO
STRCO\|Gene_OrderedLocusName=SCO4731\|UniProtKB=O86776	Streptomyces coelicolor	LDO
MYCTU\|Gene_OrderedLocusName=Rv3455c\|UniProtKB=P9WHP9	Mycobacterium tuberculosis	LDO
MYCGE\|EnsemblGenome=MG_182\|UniProtKB=P47428	mycoplasma genitalium	LDO
CLOBH\|Gene_OrderedLocusName=CBO1914\|UniProtKB=A5I338	Clostridium botulinum	O
BACCR\|EnsemblGenome=BC_0471\|UniProtKB=Q813Z9	Bacillus cereus	O
CLOBH\|Gene_OrderedLocusName=CBO3447\|UniProtKB=A5I7H2	Clostridium botulinum	LDO
STRR6\|EnsemblGenome=spr1451\|UniProtKB=Q8CWQ1	Streptococcus pneumoniae	LDO
STAA8\|EnsemblGenome=SAOUHSC_02480\|UniProtKB=Q2FW37	Staphylococcus aureus	LDO
LISMO\|EnsemblGenome=CAD00676\|UniProtKB=Q8Y457	Listeria monocytogenes	LDO
BACSU\|EnsemblGenome=BSU_01480\|UniProtKB=P70973	Bacillus subtilis	LDO
BACCR\|EnsemblGenome=BC_0163\|UniProtKB=Q814C2	Bacillus cereus	LDO
THEMA\|EnsemblGenome=TM_1574\|UniProtKB=Q9X1R0	Thermotoga maritima	LDO
DEIRA\|EnsemblGenome=DR_2290\|UniProtKB=Q9RS37	Deinococcus radiodurans	LDO
GLOVI\|EnsemblGenome=BAC91510\|UniProtKB=Q7MBB9	Gloeobacter violaceus	LDO
SYNY3\|EnsemblGenome=BAA17323\|UniProtKB=P73295	Synechocystis	LDO
LEPIN\|EnsemblGenome=LA_2740\|UniProtKB=Q8CXS6	Leptospira interrogans	LDO
BACTN\|EnsemblGenome=BT_4237\|UniProtKB=Q89ZY4	Bacteroides thetaiotaomicron	LDO
CHLTR\|EnsemblGenome=CT_463\|UniProtKB=O84469	Chlamydia trachomatis	LDO
RHOBA\|EnsemblGenome=RB2676\|UniProtKB=Q7TU07	Rhodopirellula baltica	LDO
AQUAE\|EnsemblGenome=aq_749\|UniProtKB=O66953	Aquifex aeolicus	LDO
THEYD\|EnsemblGenome=THEYE_A1546\|UniProtKB=B5YGE4	Thermodesulfovibrio yellowstonii	LDO
DICTD\|EnsemblGenome=Dtur_1013\|UniProtKB=B8E1G5	Dictyoglomus turgidum	LDO
FUSNN\|EnsemblGenome=FN1600\|UniProtKB=Q8R601	Fusobacterium nucleatum	LDO
HELPY\|EnsemblGenome=HP_0361\|UniProtKB=P56144	Helicobacter pylori	LDO
NEIMB\|EnsemblGenome=NMB2036\|UniProtKB=Q9JXI2	Neisseria meningitidis serogroup b	LDO
GEOSL\|EnsemblGenome=GSU2877\|UniProtKB=P60350	Geobacter sulfurreducens	LDO
BRADU\|EnsemblGenome=BAC53372\|UniProtKB=Q89BP1	Bradyrhizobium diazoefficiens	LDO
COXBU\|EnsemblGenome=CBU_0892\|UniProtKB=Q4AAX9	Coxiella burnetii	LDO
HAEIN\|EnsemblGenome=HI_1644\|UniProtKB=P45291	Haemophilus influenzae	LDO
SHEON\|Gene_OrderedLocusName=SO_3068\|UniProtKB=K4PSU2	Shewanella oneidensis	LDO
VIBCH\|EnsemblGenome=VC_0999\|UniProtKB=Q9KTA4	Vibrio cholerae	LDO
XANCP\|EnsemblGenome=XCC2546\|UniProtKB=Q8P7R5	Xanthomonas campestris	LDO
PSEAE\|EnsemblGenome=PA3114\|UniProtKB=O87016	Pseudomonas aeruginosa	LDO
SALTY\|EnsemblGenome=STM2368\|UniProtKB=Q8ZNB9	Salmonella typhimurium	LDO
YERPE\|EnsemblGenome=YP_2398\|UniProtKB=Q8ZD27	Yersinia pestis	LDO
ECOLI\|EnsemblGenome=BAA16175\|UniProtKB=P07649	Escherichia coli	LDO