PANTHER Gene Information

Gene Symbol(s):

LOC107777727

Organism:

Nicotiana tabacum

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Gene Name:

Splicing factor U2af large subunit

Gene ID:

LOC107777727

Protein ID:

A0A1S3YM47

Persistent Id:

PTN004610889

Alternate Ids:

A0A1S3YM47(Synonym)	107777727(GeneID)
XM_016597853(refSeq)	1025076191(GI)
A0A1S3YM47_TOBAC(UniProtKB-ID)
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PANTHER Classification

PANTHER Family:	RNA-BINDING PROTEIN (PTHR23139)
PANTHER Subfamily:	SPLICING FACTOR U2AF 65 KDA SUBUNIT (PTHR23139:SF9)
PANTHER GO-slim Molecular Function:	pre-mRNA binding single-stranded RNA binding
PANTHER GO-slim Biological Process:	spliceosomal complex assembly
PANTHER GO-slim Cellular Component:	U2-type prespliceosome nuclear speck
PANTHER protein class:

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	nucleic acid binding, RNA binding, pre-mRNA 3'-splice site binding, poly-pyrimidine tract binding
GO BP Complete:	RNA splicing, mRNA processing, spliceosomal complex assembly
GO CC Complete:	commitment complex, nucleus, U2AF complex, nuclear speck, U2-type prespliceosome

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=23156\|UniProtKB=P26368	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000011523.5\|UniProtKB=K6ZG02	Pan troglodytes	LDO
MACMU\|Ensembl=ENSMMUG00000004810.4\|UniProtKB=F6RZR0	Macaca mulatta	LDO
MOUSE\|MGI=MGI=98886\|UniProtKB=P26369	Mus musculus	LDO
RAT\|RGD=1310690\|UniProtKB=A0A8I6A9Y1	Rattus norvegicus	O
RAT\|RGD=1310690\|UniProtKB=A0A8I6A9Y1	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000002830.6\|UniProtKB=Q24JZ8	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000034815.3\|UniProtKB=A0A481APG3	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000010110.4\|UniProtKB=A0A9L0S799	Equus caballus	LDO
CANLF\|Ensembl=ENSCAFG00845000480.1\|UniProtKB=A0A8I3RP62	Canis lupus familiaris	LDO
ORNAN\|Ensembl=ENSOANG00000040411.1\|UniProtKB=A0A6I8PMQ0	Ornithorhynchus anatinus	LDO
ANOCA\|Ensembl=ENSACAG00000015489.3\|UniProtKB=H9GMF2	Anolis carolinensis	LDO
XENLA\|Gene=u2af2.S\|UniProtKB=A0A1L8FGS2	Xenopus laevis	LDO
XENLA\|Gene=LOC108696656\|UniProtKB=A0A1L8FMU9	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-494184\|UniProtKB=Q6NVN9	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000011545.2\|UniProtKB=H2M7K7	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-050706-131\|UniProtKB=E7F8Y4	Danio rerio	O
DANRE\|ZFIN=ZDB-GENE-040426-1881\|UniProtKB=A0A0R4IMP0	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000010843.1\|UniProtKB=W5MY30	lepisosteus oculatus	O
LEPOC\|Ensembl=ENSLOCG00000008050.1\|UniProtKB=W5MN22	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000003455.3\|UniProtKB=F6UAX7	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118429074\|UniProtKB=A0A9J7M6W8	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC588126\|UniProtKB=A0A7M7HKD8	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00006697\|UniProtKB=P90978	Caenorhabditis elegans	LDO
CAEBR\|WormBase=WBGene00035480\|UniProtKB=P90727	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00114928\|UniProtKB=A0A2A6CQR2	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0034834\|UniProtKB=Q9W1T4	Drosophila melanogaster	O
DROME\|FlyBase=FBgn0005411\|UniProtKB=Q24562	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP002908\|UniProtKB=Q7QD20	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC005736\|UniProtKB=D6WWI5	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_232197\|UniProtKB=E9FS33	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW002946\|UniProtKB=B7PCK4	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG186326\|UniProtKB=T1FNY6	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG185543\|UniProtKB=T1FMY6	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g228171\|UniProtKB=A7RJT7	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG21652\|UniProtKB=B3RQ51	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_1352\|UniProtKB=A9UNN4	Monosiga brevicollis	LDO
YEAST\|SGD=S000001557\|UniProtKB=P36084	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_ADR130W\|UniProtKB=Q759Z3	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000187516\|UniProtKB=A0A1D8PGR8	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_E09889g\|UniProtKB=Q6C6F8	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_06681\|UniProtKB=C8V1L6	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_7G05310\|UniProtKB=Q4WGK1	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU00231\|UniProtKB=Q7RZY0	Neurospora crassa	O
NEUCR\|EnsemblGenome=NCU03039\|UniProtKB=Q7SDG9	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_02977\|UniProtKB=A7ECD8	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_04461\|UniProtKB=Q0UUV3	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPBC146.07\|UniProtKB=P36629	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_03995\|UniProtKB=B6K5L9	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CNF01250\|UniProtKB=Q5KFM4	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_05363\|UniProtKB=A0A0D1CHB4	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_22302\|UniProtKB=H6QU19	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_21058\|UniProtKB=F4PE51	Batrachochytrium dendrobatidis	LDO
ENTH1\|EnsemblGenome=CL6EHI_098300\|UniProtKB=C4LXB3	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0286395\|UniProtKB=Q54LV5	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_56283\|UniProtKB=F0ZQL5	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_03_0520\|UniProtKB=E9ACJ7	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb10.70.3950\|UniProtKB=Q38BP9	Trypanosoma brucei	LDO
TRIV3\|Gene_ORFName=TVAG_453940\|UniProtKB=A2DPX0	Trichomonas vaginalis	LDO
TRIV3\|Gene_ORFName=TVAG_062480\|UniProtKB=A2DLL0	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_417030\|UniProtKB=A2ESG1	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_056670\|UniProtKB=A2ECM6	Trichomonas vaginalis	O
PLAF7\|Gene_ORFName=PF3D7_1326300\|UniProtKB=A0A5K1K940	Plasmodium falciparum	O
PLAF7\|EnsemblGenome=PF3D7_0716000\|UniProtKB=Q8IBU0	Plasmodium falciparum	O
PLAF7\|EnsemblGenome=PF3D7_1468800\|UniProtKB=Q8IKE9	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00011065001\|UniProtKB=A0CXB6	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00020344001\|UniProtKB=A0DUF5	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00039350001\|UniProtKB=A0DA33	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00021019001\|UniProtKB=A0DWG0	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00023584001\|UniProtKB=A0E540	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00022927001\|UniProtKB=A0E387	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00006257001\|UniProtKB=A0C4P1	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00024974001\|UniProtKB=A0EAC5	Paramecium tetraurelia	LDO
PARTE\|EnsemblGenome=GSPATT00007366001\|UniProtKB=A0CGK9	Paramecium tetraurelia	O
THAPS\|EnsemblGenome=THAPSDRAFT_263000\|UniProtKB=B8C4E7	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3GVM8_PHYRM\|UniProtKB=H3GVM8	Phytophthora ramorum	O
PHYRM\|Gene=H3GDY4_PHYRM\|UniProtKB=H3GDY4	Phytophthora ramorum	O
PHYRM\|Gene=H3GIY2_PHYRM\|UniProtKB=H3GIY2	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_13g607850v5\|UniProtKB=A0A2K3D1J8	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_02g093975v5\|UniProtKB=A0A2K3E1C6	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_12g499750v5\|UniProtKB=A0A2K3D3A9	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_12g549100v5\|UniProtKB=A0A2K3D6A2	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_16g695450v5\|UniProtKB=A0A2K3CSA5	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_07g352650v5\|UniProtKB=A0A2K3DLE6	Chlamydomonas reinhardtii	O
CHLRE\|EnsemblGenome=CHLRE_09g391949v5\|UniProtKB=A0A2K3DE86	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00009p00267190\|UniProtKB=W1NJ84	Amborella trichopoda	LDO
NELNU\|Gene=LOC104587169\|UniProtKB=A0A1U7YRY1	Nelumbo nucifera	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400022438\|UniProtKB=M1C1P3	Solanum tuberosum	LDO
CITSI\|Gene_ORFName=CISIN_1g009944mg\|UniProtKB=A0A067G8I9	Citrus sinensis	LDO
MEDTR\|EnsemblGenome=MTR_2g013130\|UniProtKB=G7IP17	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr04_17170\|UniProtKB=A0A2I4GWN7	Juglans regia	O
JUGRE\|EnsemblGenome=Jr04_17160\|UniProtKB=A0A2I4GWP1	Juglans regia	LDO
PRUPE\|EnsemblGenome=PRUPE_4G044200\|UniProtKB=A0A251PFM2	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_235524\|UniProtKB=D8SYH5	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_24180\|UniProtKB=D8SYH4	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_13030\|UniProtKB=D8S917	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_153568\|UniProtKB=D8S916	Selaginella moellendorffii	O
SELML\|EnsemblGenome=SELMODRAFT_161898\|UniProtKB=D8T825	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_160385\|UniProtKB=D8T2C4	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c10_9710\|UniProtKB=A0A2K1JYF7	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c6_9210\|UniProtKB=A0A7I4E322	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c14_9430\|UniProtKB=A0A2K1JH19	Physcomitrella patens	LDO
PHYPA\|EnsemblGenome=Pp3c25_5610\|UniProtKB=A0A2K1IDY1	Physcomitrella patens	O
MARPO\|EnsemblGenome=MARPO_0054s0061\|UniProtKB=A0A2R6WVR7	Marchantia polymorpha	O
MARPO\|EnsemblGenome=MARPO_0038s0053\|UniProtKB=A0A2R6X3N5	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_000540160\|UniProtKB=A0A0U9HTV2	Klebsormidium nitens	LDO