PANTHER Gene Information

Gene Symbol(s):

At1g17640

Organism:

Arabidopsis thaliana

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Gene Name:

RNA-binding (RRM_RBD_RNP motifs) family protein

Gene ID:

2007903

Protein ID:

F4I906

Persistent Id:

PTN002768988

Alternate Ids:

NP_001320299(refSeq)	838341(GeneID)
locus:2007903(TAIR)	332191496(GI)
AEE29617(EMBL-CDS)	F4I906(Synonym)
AT1G17640(Ensembl)	CP002684(EMBL)
F4I906_ARATH(UniProtKB-ID)
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PANTHER Classification

PANTHER Family:	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN (PTHR48033)
PANTHER Subfamily:	RNA-BINDING PROTEIN SQUID (PTHR48033:SF10)
PANTHER GO-slim Molecular Function:	RNA binding
PANTHER GO-slim Biological Process:	regulation of gene expression
PANTHER GO-slim Cellular Component:	chromatin nucleoplasm
PANTHER protein class:	RNA metabolism protein

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	RNA binding
GO BP Complete:	regulation of gene expression
GO CC Complete:	cytoplasm, chromatin, nucleoplasm

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=11571\|UniProtKB=Q13148	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000048576.1\|UniProtKB=H2PY00	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000042352.1\|UniProtKB=A0A2I2YWU7	Gorilla gorilla gorilla	O
GORGO\|Ensembl=ENSGGOG00000015357.3\|UniProtKB=G3RH63	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000007456.4\|UniProtKB=H9EMX3	Macaca mulatta	O
MOUSE\|MGI=MGI=2387629\|UniProtKB=Q921F2	Mus musculus	O
RAT\|RGD=1310906\|UniProtKB=A0A8I6GLU8	Rattus norvegicus	O
BOVIN\|Ensembl=ENSBTAG00000003697.6\|UniProtKB=G3MX91	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000023126.4\|UniProtKB=A0A8D0UXS6	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000008338.3\|UniProtKB=F6WAU6	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000000050.5\|UniProtKB=A0A2I2U8C8	Felis catus	O
CANLF\|Ensembl=ENSCAFG00845007703.1\|UniProtKB=A0A8I3N4T6	Canis lupus familiaris	O
CANLF\|Ensembl=ENSCAFG00845003100.1\|UniProtKB=A0A8I3MQ17	Canis lupus familiaris	O
MONDO\|Ensembl=ENSMODG00000011233.4\|UniProtKB=A0A5F8GU32	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000013320.3\|UniProtKB=F7EDX1	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010021644.1\|UniProtKB=A0A8V0ZL67	Gallus gallus	O
CHICK\|Gene_ORFName=RCJMB04_5g9\|UniProtKB=Q5ZLN5	Gallus gallus	O
XENLA\|Gene=tardbp.S\|UniProtKB=A0A8J0TE74	Xenopus laevis	O
XENLA\|Gene=tardbp.L\|UniProtKB=A0A8J0T838	Xenopus laevis	O
XENTR\|Xenbase=XB-GENE-974453\|UniProtKB=Q28F51	Xenopus tropicalis	O
ORYLA\|Ensembl=ENSORLG00000003593.2\|UniProtKB=H2LEV4	Oryzias latipes	O
ORYLA\|Ensembl=ENSORLG00000005188.2\|UniProtKB=A0A3B3I3X8	Oryzias latipes	O
DANRE\|ZFIN=ZDB-GENE-030131-3777\|UniProtKB=Q802C7	Danio rerio	O
DANRE\|Gene=tardbpl\|UniProtKB=A0A8M9PSZ1	Danio rerio	O
LEPOC\|Ensembl=ENSLOCG00000006604.1\|UniProtKB=W5MHW9	lepisosteus oculatus	O
CIOIN\|Ensembl=ENSCING00000000050.3\|UniProtKB=Q4H2Q6	Ciona intestinalis	O
BRAFL\|Gene=LOC118430725\|UniProtKB=A0A9J7NCB5	Branchiostoma floridae	O
BRAFL\|Gene=LOC118430918\|UniProtKB=A0A9J7MB70	Branchiostoma floridae	O
STRPU\|EnsemblGenome=LOC584774\|UniProtKB=A0A7M7NWT5	Strongylocentrotus purpuratus	O
STRPU\|EnsemblGenome=LOC115924609\|UniProtKB=A0A7M7NZU7	Strongylocentrotus purpuratus	O
CAEEL\|WormBase=WBGene00006514\|UniProtKB=D0VWM8	Caenorhabditis elegans	O
CAEBR\|WormBase=WBGene00026137\|UniProtKB=A8WSH3	Caenorhabditis briggsae	O
DROME\|FlyBase=FBgn0036496\|UniProtKB=Q9VUN2	Drosophila melanogaster	O
DROME\|FlyBase=FBgn0025790\|UniProtKB=Q8SXP8	Drosophila melanogaster	O
ANOGA\|EnsemblGenome=AGAP003497\|UniProtKB=Q7PSL3	Anopheles gambiae	O
TRICA\|EnsemblGenome=TC006055\|UniProtKB=D6WYQ8	Tribolium castaneum	O
DAPPU\|EnsemblGenome=DAPPUDRAFT_97182\|UniProtKB=E9G0X0	Daphnia pulex	O
IXOSC\|EnsemblGenome=ISCW012026\|UniProtKB=B7QFB3	Ixodes scapularis	O
HELRO\|EnsemblGenome=HelroG157599\|UniProtKB=T1EMD7	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG170286\|UniProtKB=T1F2V8	helobdella robusta	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g240700\|UniProtKB=A7RU25	Nematostella vectensis	O
MOUSE\|MGI=MGI=1921734\|UniProtKB=Q9D3U4	Mus musculus	O
RAT\|RGD=1562219\|UniProtKB=M0R9X3	Rattus norvegicus	O
PIG\|Ensembl=ENSSSCG00000012473.5\|UniProtKB=A0A287A550	Sus scrofa	O
HUMAN\|HGNC=5037\|UniProtKB=O14979	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000016217.7\|UniProtKB=H2QPS8	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000003714.3\|UniProtKB=G3QMB5	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000015777.4\|UniProtKB=H9ESS0	Macaca mulatta	O
MOUSE\|MGI=MGI=1355299\|UniProtKB=Q9Z130	Mus musculus	O
RAT\|RGD=1309950\|UniProtKB=Q3SWU3	Rattus norvegicus	O
PIG\|Ensembl=ENSSSCG00000037245.3\|UniProtKB=A0A286ZYE7	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000022692.4\|UniProtKB=A0A3Q2LIC8	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000000455.5\|UniProtKB=M3VUT2	Felis catus	O
CANLF\|Ensembl=ENSCAFG00845018924.1\|UniProtKB=A0A8I3NY09	Canis lupus familiaris	O
MONDO\|Ensembl=ENSMODG00000011916.4\|UniProtKB=F7E028	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000004651.3\|UniProtKB=F7FH44	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010004003.1\|UniProtKB=A0A8V0XFL4	Gallus gallus	O
CHICK\|Gene_ORFName=RCJMB04_29l7\|UniProtKB=Q5ZI72	Gallus gallus	O
ANOCA\|Ensembl=ENSACAG00000010416.4\|UniProtKB=G1KK24	Anolis carolinensis	O
XENLA\|Gene=hnrnpdl-b\|UniProtKB=Q6NU14	Xenopus laevis	O
XENLA\|Gene=hnrnpdl.S\|UniProtKB=A0A8J0U4L6	Xenopus laevis	O
XENLA\|Gene=hnrnpdl-a\|UniProtKB=Q7ZX83	Xenopus laevis	O
XENTR\|Xenbase=XB-GENE-495016\|UniProtKB=Q640A2	Xenopus tropicalis	O
DANRE\|ZFIN=ZDB-GENE-040426-2717\|UniProtKB=Q7SXN2	Danio rerio	O
LEPOC\|Ensembl=ENSLOCG00000010736.1\|UniProtKB=W5MXP4	lepisosteus oculatus	O
HUMAN\|HGNC=5036\|UniProtKB=Q14103	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000016215.6\|UniProtKB=H2QPS6	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000026760.2\|UniProtKB=G3SB22	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000060484.1\|UniProtKB=F7AVH8	Macaca mulatta	O
MOUSE\|MGI=MGI=101947\|UniProtKB=Q60668	Mus musculus	O
RAT\|RGD=620365\|UniProtKB=Q9JJ54	Rattus norvegicus	O
BOVIN\|Ensembl=ENSBTAG00000013952.6\|UniProtKB=A6H6Y0	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000009249.5\|UniProtKB=F1RVC9	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000055320.1\|UniProtKB=F6Z0C6	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000027404.4\|UniProtKB=A0A337SSS9	Felis catus	O
CANLF\|Ensembl=ENSCAFG00845018743.1\|UniProtKB=A0A8I3P1F3	Canis lupus familiaris	O
MONDO\|Ensembl=ENSMODG00000011898.4\|UniProtKB=A0A5F8H1B6	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000001932.4\|UniProtKB=A0A6I8PMM6	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010004018.1\|UniProtKB=A0A8V0XIC8	Gallus gallus	O
ANOCA\|Ensembl=ENSACAG00000010342.4\|UniProtKB=A0A803T0C8	Anolis carolinensis	O
XENLA\|Gene=LOC108704105\|UniProtKB=A0A8J0TW38	Xenopus laevis	O
XENLA\|Gene=hnrnpd.L\|UniProtKB=A0A1L8HVK9	Xenopus laevis	O
XENTR\|Xenbase=XB-GENE-988375\|UniProtKB=A0A803KL05	Xenopus tropicalis	O
ORYLA\|Ensembl=ENSORLG00000001833.2\|UniProtKB=H2L8V3	Oryzias latipes	O
DANRE\|ZFIN=ZDB-GENE-070424-97\|UniProtKB=A4QP67	Danio rerio	O
LEPOC\|Ensembl=ENSLOCG00000010743.1\|UniProtKB=W5MXQ6	lepisosteus oculatus	O
PANTR\|Ensembl=ENSPTRG00000048246.1\|UniProtKB=A0A2I3TB76	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000028444.2\|UniProtKB=G3S989	Gorilla gorilla gorilla	O
HUMAN\|HGNC=5034\|UniProtKB=Q99729	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000017601.6\|UniProtKB=K7CPF8	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000011692.3\|UniProtKB=G3R7R0	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000003996.4\|UniProtKB=H9YVR7	Macaca mulatta	LDO
MOUSE\|MGI=MGI=1330294\|UniProtKB=Q99020	Mus musculus	LDO
RAT\|RGD=69255\|UniProtKB=Q9QX81	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000013627.6\|UniProtKB=A0A3Q1LZD9	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000001932.4\|UniProtKB=F1SHL4	Sus scrofa	O
PIG\|Ensembl=ENSSSCG00000014031.5\|UniProtKB=A0A287BMB6	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000018242.4\|UniProtKB=A0A9L0SWC0	Equus caballus	LDO
CANLF\|Ensembl=ENSCAFG00845009974.1\|UniProtKB=A0A8I3NPT9	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000004217.4\|UniProtKB=A0A5F8G9E0	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000004998.4\|UniProtKB=F7GB01	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010015142.1\|UniProtKB=A0A8V0YRG0	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000016946.4\|UniProtKB=G1KTC4	Anolis carolinensis	LDO
XENLA\|Gene=hnrnpab.L\|UniProtKB=Q7ZYE9	Xenopus laevis	O
XENLA\|Gene=hnrnpab.S\|UniProtKB=Q6GM69	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-6042555\|UniProtKB=Q28BP1	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000005327.2\|UniProtKB=H2LL08	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-030131-185\|UniProtKB=Q6NYU8	Danio rerio	LDO
DANRE\|ZFIN=ZDB-GENE-040426-2516\|UniProtKB=Q6NYA1	Danio rerio	O
LEPOC\|Ensembl=ENSLOCG00000009773.1\|UniProtKB=W5MU82	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000016737.2\|UniProtKB=F6QZW1	Ciona intestinalis	LDO
CIOIN\|Ensembl=ENSCING00000003877.3\|UniProtKB=F6XGK4	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118411250\|UniProtKB=A0A9J7KTF9	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC592285\|UniProtKB=A0A7M7HFN5	Strongylocentrotus purpuratus	LDO
DROME\|FlyBase=FBgn0263396\|UniProtKB=Q08473	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP006668\|UniProtKB=A0NEX1	Anopheles gambiae	O
ANOGA\|EnsemblGenome=AGAP000399\|UniProtKB=F5HJK0	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC000928\|UniProtKB=D6W948	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_189289\|UniProtKB=E9HDK2	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW007146\|UniProtKB=B7PVI7	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG72414\|UniProtKB=T1G0Z7	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG77494\|UniProtKB=T1G2Y6	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG94668\|UniProtKB=T1G921	helobdella robusta	LDO
STRPU\|EnsemblGenome=LOC592907\|UniProtKB=A0A7M7MYM6	Strongylocentrotus purpuratus	O
PRIPA\|EnsemblGenome=WBGene00276889\|UniProtKB=A0A2A6D0C3	Pristionchus pacificus	O
HELRO\|EnsemblGenome=HelroG178116\|UniProtKB=T1FCR6	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG132012\|UniProtKB=T1EHX0	helobdella robusta	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g86628\|UniProtKB=A7RM72	Nematostella vectensis	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g245351\|UniProtKB=A7SHQ6	Nematostella vectensis	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_30329\|UniProtKB=A9VDN2	Monosiga brevicollis	LDO
CANAL\|CGD=CAL0000199454\|UniProtKB=A0A1D8PIP0	Candida albicans	LDO
PUCGT\|EnsemblGenome=PGTG_20403\|UniProtKB=E3NXZ8	Puccinia graminis	LDO
PUCGT\|EnsemblGenome=PGTG_07133\|UniProtKB=E3K9E2	Puccinia graminis	LDO
ENTH1\|EnsemblGenome=EHI_183100\|UniProtKB=C4LV83	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0279695\|UniProtKB=Q54WE9	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_30303\|UniProtKB=F0ZF84	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_23_0730\|UniProtKB=Q4QB90	Leishmania major	O
LEIMA\|EnsemblGenome=LMJF_24_1570\|UniProtKB=Q4QAH4	Leishmania major	LDO
TRIV3\|Gene_ORFName=TVAG_108440\|UniProtKB=A2EQG8	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_345400\|UniProtKB=A2EW18	Trichomonas vaginalis	LDO
PLAF7\|EnsemblGenome=PF3D7_0916700\|UniProtKB=Q8I2Y5	Plasmodium falciparum	LDO
PLAF7\|EnsemblGenome=PF3D7_0414500\|UniProtKB=Q8I1U3	Plasmodium falciparum	O
PARTE\|EnsemblGenome=GSPATT00022603001\|UniProtKB=A0E2B4	Paramecium tetraurelia	LDO
CHLRE\|EnsemblGenome=CHLRE_07g330300v5\|UniProtKB=A0A2K3DJU4	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00036p00067000\|UniProtKB=U5CQ50	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_14G01000\|UniProtKB=A0A0K9PWH1	Zostera marina	O
ZOSMR\|Gene_ORFName=ZOSMA_339G00100\|UniProtKB=A0A0K9P828	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma07_g13370\|UniProtKB=A0A804JVE4	Musa acuminata subsp. malaccensis	LDO
MUSAM\|EnsemblGenome=Ma10_g21190\|UniProtKB=A0A804KYM7	Musa acuminata subsp. malaccensis	O
SETIT\|EnsemblGenome=SETIT_020253mg\|UniProtKB=K3Z135	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3004G095300\|UniProtKB=C5XYF2	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb205130\|UniProtKB=B4FHJ8	Zea mays	LDO
MAIZE\|EnsemblGenome=Zm00001eb240020\|UniProtKB=C0P8S9	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os02g0221500\|UniProtKB=Q6YVH3	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_3g08380v3\|UniProtKB=I1HYU9	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.6HG0580320\|UniProtKB=F2D3D5	Hordeum vulgare subsp. vulgare	LDO
SETIT\|EnsemblGenome=SETIT_006870mg\|UniProtKB=K3XY62	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3010G171100\|UniProtKB=C5Z4R7	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb383950\|UniProtKB=K7VDH6	Zea mays	O
MAIZE\|EnsemblGenome=Zm00001eb277380\|UniProtKB=B7ZX91	Zea mays	O
ORYSJ\|EnsemblGenome=Os06g0566100\|UniProtKB=A0A0P0WY24	Oryza sativa	O
BRADI\|EnsemblGenome=BRADI_1g37692v3\|UniProtKB=I1GXW9	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.7HG0717200\|UniProtKB=A0A8I6YGZ0	Hordeum vulgare subsp. vulgare	O
HELAN\|EnsemblGenome=HanXRQr2_Chr09g0417021\|UniProtKB=A0A251U0M4	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C600310970\|UniProtKB=A0A9R1X4J0	Lactuca sativa	LDO
TOBAC\|Gene=LOC107829667\|UniProtKB=A0A1S4DH69	Nicotiana tabacum	O
TOBAC\|Gene=LOC107806609\|UniProtKB=A0A1S4BBL3	Nicotiana tabacum	O
TOBAC\|Gene=LOC107785518\|UniProtKB=A0A1S3ZD04	Nicotiana tabacum	O
TOBAC\|Gene=LOC107825670\|UniProtKB=A0A1S4D3X4	Nicotiana tabacum	LDO
VITVI\|EnsemblGenome=Vitvi09g00196\|UniProtKB=D7U018	Vitis vinifera	LDO
POPTR\|EnsemblGenome=POPTR_005G105700v3\|UniProtKB=U5GH90	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_001G196500v3\|UniProtKB=A0A2K2C0F2	Populus trichocarpa	LDO
RICCO\|Gene_ORFName=RCOM_0655610\|UniProtKB=B9S5X3	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_13G348800\|UniProtKB=I1M5B0	Glycine max	LDO
CUCSA\|EnsemblGenome=Csa_7G450760\|UniProtKB=A0A0A0K9M1	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_3G048000\|UniProtKB=A0A251PVC7	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_48637\|UniProtKB=D8RC63	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c26_4470\|UniProtKB=A0A2K1IBU7	Physcomitrella patens	LDO
PHYPA\|EnsemblGenome=Pp3c4_17570\|UniProtKB=A0A2K1KNW2	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c4_17440\|UniProtKB=A0A2K1KNV9	Physcomitrella patens	O
MARPO\|EnsemblGenome=MARPO_0002s0093\|UniProtKB=A0A2R6XU25	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_001670110\|UniProtKB=A0A1Y1HZ05	Klebsormidium nitens	O
KLENI\|Gene_ORFName=KFL_002220020\|UniProtKB=A0A1Y1IAM8	Klebsormidium nitens	LDO