PANTHER Gene Information

Gene Symbol(s):

zgc:101754

Organism:

Danio rerio

View Gene in Tree


Tree	Reduced Tree

Gene Name:

RNA binding motif protein 41

Gene ID:

ZDB-GENE-041114-107

Protein ID:

Q5U3Q9

Persistent Id:

PTN000413265

Alternate Ids:

NM_001007405(refSeq)	55250637(GI)
ZDB-GENE-041114-107(ZFIN)	Q5U3Q9_DANRE(UniProtKB-ID)
BC085431(EMBL)	Q5U3Q9(Synonym)
492764(GeneID)	AAH85431(EMBL-CDS)
Show All

PANTHER Classification

PANTHER Family:	RNA-BINDING REGION-CONTAINING PROTEIN 3 (PTHR16105)
PANTHER Subfamily:	RNA-BINDING PROTEIN 41 (PTHR16105:SF2)
PANTHER GO-slim Molecular Function:	pre-mRNA binding snRNA binding
PANTHER GO-slim Biological Process:	mRNA splicing, via spliceosome
PANTHER GO-slim Cellular Component:	U12-type spliceosomal complex
PANTHER protein class:

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	nucleic acid binding, U12 snRNA binding, pre-mRNA intronic binding, RNA binding
GO BP Complete:	mRNA splicing, via spliceosome
GO CC Complete:	U12-type spliceosomal complex

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=25617\|UniProtKB=Q96IZ5	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000022158.6\|UniProtKB=H2R4L8	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000006587.3\|UniProtKB=A0A2I2Z1K6	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000023172.4\|UniProtKB=F7FD98	Macaca mulatta	LDO
MOUSE\|MGI=MGI=2444923\|UniProtKB=Q8JZV4	Mus musculus	LDO
RAT\|RGD=1590579\|UniProtKB=D3ZTA4	Rattus norvegicus	LDO
BOVIN\|Ensembl=ENSBTAG00000000955.5\|UniProtKB=G3X691	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000012556.5\|UniProtKB=F1RXK8	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000056016.1\|UniProtKB=A0A3Q2GZN1	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000001982.6\|UniProtKB=M3VXN6	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845017359.1\|UniProtKB=A0A8I3NXL5	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000002471.2\|UniProtKB=A0A5F8H7E7	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000049754.1\|UniProtKB=A0A6I8MZQ3	Ornithorhynchus anatinus	O
ORNAN\|Ensembl=ENSOANG00000015952.2\|UniProtKB=A0A6I8MX65	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010016319.1\|UniProtKB=A0A8V0Z205	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000014146.4\|UniProtKB=H9GKQ8	Anolis carolinensis	LDO
ORYLA\|Ensembl=ENSORLG00000015367.2\|UniProtKB=H2MKM4	Oryzias latipes	LDO
LEPOC\|Ensembl=ENSLOCG00000014958.1\|UniProtKB=W5NCQ8	lepisosteus oculatus	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g215025\|UniProtKB=A7SNN4	Nematostella vectensis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_86091\|UniProtKB=F4NX39	Batrachochytrium dendrobatidis	O
DICDI\|dictyBase=DDB_G0270734\|UniProtKB=Q55CC1	Dictyostelium discoideum	O
DICPU\|EnsemblGenome=DICPUDRAFT_149032\|UniProtKB=F0ZCN0	Dictyostelium purpureum	O
AMBTC\|EnsemblGenome=AMTR_s00038p00125360\|UniProtKB=U5CWQ2	Amborella trichopoda	O
ZOSMR\|Gene_ORFName=ZOSMA_13G00310\|UniProtKB=A0A0K9Q045	Zostera marina	O
MUSAM\|EnsemblGenome=Ma09_g17030\|UniProtKB=A0A804KKG2	Musa acuminata subsp. malaccensis	O
SETIT\|EnsemblGenome=SETIT_035599mg\|UniProtKB=K4A9P3	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3001G386100\|UniProtKB=C5X1Q3	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb015560\|UniProtKB=B4FG83	Zea mays	O
ORYSJ\|EnsemblGenome=Os03g0326600\|UniProtKB=Q10M15	Oryza sativa	O
BRADI\|EnsemblGenome=BRADI_2g18227v3\|UniProtKB=I1HH19	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.1HG0046830\|UniProtKB=A0A8I6WJ31	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS1D02G171900\|UniProtKB=A0A3B5ZTG3	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS1B02G185400\|UniProtKB=A0A3B5YVZ9	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6D02G086800\|UniProtKB=A0A3B6QDM1	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6B02G124200\|UniProtKB=A0A3B6PHS4	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6A02G096000\|UniProtKB=A0A3B6NL83	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS1A02G171500\|UniProtKB=A0A3B5XYX4	Triticum aestivum	O
SPIOL\|Gene=LOC110776264\|UniProtKB=A0A9R0JJD5	Spinacia oleracea	O
HELAN\|EnsemblGenome=HanXRQr2_Chr02g0079741\|UniProtKB=A0A251VHV5	Helianthus annuus	O
LACSA\|Gene_ORFName=LSAT_V11C600313210\|UniProtKB=A0A9R1V8B4	Lactuca sativa	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a010145mg\|UniProtKB=A0A022QCY6	Erythranthe guttata	O
SOLTU\|EnsemblGenome=PGSC0003DMG400001606\|UniProtKB=M0ZMU2	Solanum tuberosum	O
SOLLC\|EnsemblGenome=Solyc01g110820.3\|UniProtKB=A0A3Q7ETT1	Solanum lycopersicum	O
TOBAC\|Gene=LOC107777363\|UniProtKB=A0A1S3YKT0	Nicotiana tabacum	O
TOBAC\|Gene=LOC107777783\|UniProtKB=A0A1S3YN98	Nicotiana tabacum	O
TOBAC\|Gene=LOC107819191\|UniProtKB=A0A1S4CIC8	Nicotiana tabacum	O
VITVI\|Gene_OrderedLocusName=VIT_05s0102g00500\|UniProtKB=F6HYT0	Vitis vinifera	O
VITVI\|EnsemblGenome=Vitvi05g01189\|UniProtKB=D7SNK2	Vitis vinifera	O
EUCGR\|EnsemblGenome=EUGRSUZ_A02076\|UniProtKB=A0A059DGY1	Eucalyptus grandis	O
BRACM\|EnsemblGenome=Bra018574\|UniProtKB=M4DPY3	Brassica campestris	O
ARATH\|TAIR=locus=2195311\|UniProtKB=Q8RWV8	Arabidopsis thaliana	O
GOSHI\|Gene=LOC107961890\|UniProtKB=A0A1U8PTD7	Gossypium hirsutum	O
GOSHI\|Gene=LOC107892375\|UniProtKB=A0A1U8IAY8	Gossypium hirsutum	O
THECC\|EnsemblGenome=TCM_026027\|UniProtKB=A0A061F1F8	Theobroma cacao	O
POPTR\|Gene_ORFName=POPTR_019G031701\|UniProtKB=A0A3N7GB13	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_013G054300v3\|UniProtKB=B9I5U9	Populus trichocarpa	O
MANES\|EnsemblGenome=MANES_08G148100\|UniProtKB=A0A2C9VGF6	Manihot esculenta	O
RICCO\|Gene_ORFName=RCOM_1122320\|UniProtKB=B9SHJ5	Ricinus communis	O
SOYBN\|EnsemblGenome=GLYMA_16G042800\|UniProtKB=I1ML41	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_19G109200\|UniProtKB=A0A0R0EL90	Glycine max	O
MEDTR\|EnsemblGenome=MTR_7g085290\|UniProtKB=G7KZE1	Medicago truncatula	O
JUGRE\|Gene=LOC109001840\|UniProtKB=A0A6P9F735	Juglans regia	O
CUCSA\|EnsemblGenome=Csa_6G118290\|UniProtKB=A0A0A0KCT1	Cucumis sativus	O
PRUPE\|EnsemblGenome=PRUPE_6G097200\|UniProtKB=M5W4H5	Prunus persica	O
SELML\|EnsemblGenome=SELMODRAFT_235257\|UniProtKB=D8SVF8	Selaginella moellendorffii	O
PHYPA\|EnsemblGenome=Pp3c25_8310\|UniProtKB=A9S5W6	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c5_17010\|UniProtKB=A0A2K1KK24	Physcomitrella patens	O
MARPO\|EnsemblGenome=MARPO_0054s0019\|UniProtKB=A0A2R6WVN5	Marchantia polymorpha	O
KLENI\|Gene_ORFName=KFL_004020110\|UniProtKB=A0A1Y1IAY2	Klebsormidium nitens	O
KLENI\|Gene_ORFName=KFL_001550020\|UniProtKB=A0A1Y1I0X7	Klebsormidium nitens	O