PANTHER Gene Information

Gene Symbol(s):

TCM_026027

Organism:

Theobroma cacao

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Gene Name:

RNA-binding family protein isoform 4

Gene ID:

TCM_026027

Protein ID:

A0A061F1F8

Persistent Id:

PTN004488804

Alternate Ids:

508718826(GI)	A0A061F1F8_THECC(UniProtKB-ID)
EOY10723(EMBL-CDS)	CM001883(EMBL)
TCM_026027(Ensembl)	A0A061F1F8(Synonym)
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PANTHER Classification

PANTHER Family:	RNA-BINDING REGION-CONTAINING PROTEIN 3 (PTHR16105)
PANTHER Subfamily:	RNA-BINDING REGION-CONTAINING PROTEIN 3 (PTHR16105:SF0)
PANTHER GO-slim Molecular Function:	snRNA binding pre-mRNA binding
PANTHER GO-slim Biological Process:	mRNA splicing, via spliceosome
PANTHER GO-slim Cellular Component:	U12-type spliceosomal complex
PANTHER protein class:

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

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GO MF Complete:	U12 snRNA binding, pre-mRNA intronic binding, RNA binding
GO BP Complete:	mRNA splicing, via spliceosome
GO CC Complete:	nucleus, U12-type spliceosomal complex

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=25617\|UniProtKB=Q96IZ5	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000022158.6\|UniProtKB=H2R4L8	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000006587.3\|UniProtKB=A0A2I2Z1K6	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000023172.4\|UniProtKB=F7FD98	Macaca mulatta	O
MOUSE\|MGI=MGI=2444923\|UniProtKB=Q8JZV4	Mus musculus	O
RAT\|RGD=1590579\|UniProtKB=D3ZTA4	Rattus norvegicus	O
BOVIN\|Ensembl=ENSBTAG00000000955.5\|UniProtKB=G3X691	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000012556.5\|UniProtKB=F1RXK8	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000056016.1\|UniProtKB=A0A3Q2GZN1	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000001982.6\|UniProtKB=M3VXN6	Felis catus	O
CANLF\|Ensembl=ENSCAFG00845017359.1\|UniProtKB=A0A8I3NXL5	Canis lupus familiaris	O
MONDO\|Ensembl=ENSMODG00000002471.2\|UniProtKB=A0A5F8H7E7	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000049754.1\|UniProtKB=A0A6I8MZQ3	Ornithorhynchus anatinus	O
ORNAN\|Ensembl=ENSOANG00000015952.2\|UniProtKB=A0A6I8MX65	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010016319.1\|UniProtKB=A0A8V0Z205	Gallus gallus	O
ANOCA\|Ensembl=ENSACAG00000014146.4\|UniProtKB=H9GKQ8	Anolis carolinensis	O
ORYLA\|Ensembl=ENSORLG00000015367.2\|UniProtKB=H2MKM4	Oryzias latipes	O
DANRE\|ZFIN=ZDB-GENE-041114-107\|UniProtKB=Q5U3Q9	Danio rerio	O
LEPOC\|Ensembl=ENSLOCG00000014958.1\|UniProtKB=W5NCQ8	lepisosteus oculatus	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g215025\|UniProtKB=A7SNN4	Nematostella vectensis	O
PANTR\|Ensembl=ENSPTRG00000044227.1\|UniProtKB=A0A2I3RPZ6	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000026201.2\|UniProtKB=A0A2I2ZFB2	Gorilla gorilla gorilla	O
HUMAN\|HGNC=18666\|UniProtKB=Q96LT9	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000033902.3\|UniProtKB=H2QZU7	Pan troglodytes	LDO
MACMU\|Ensembl=ENSMMUG00000018039.4\|UniProtKB=F7EVL6	Macaca mulatta	LDO
MOUSE\|MGI=MGI=1914475\|UniProtKB=Q3UZ01	Mus musculus	LDO
RAT\|RGD=1582776\|UniProtKB=Q4G055	Rattus norvegicus	LDO
BOVIN\|Gene=RNPC3\|UniProtKB=Q3MHP0	Bos taurus	O
BOVIN\|Ensembl=ENSBTAG00000019091.6\|UniProtKB=A0A3Q1LY80	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000037254.3\|UniProtKB=F1S572	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000021148.4\|UniProtKB=A0A9L0RHU0	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000024312.4\|UniProtKB=M3X571	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845010771.1\|UniProtKB=A0A8I3NH24	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000002946.4\|UniProtKB=A0A5F8HHH3	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000008220.3\|UniProtKB=F7CGT9	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010023227.1\|UniProtKB=A0A8V0ZU58	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000002029.4\|UniProtKB=G1KAA4	Anolis carolinensis	LDO
XENLA\|Gene=rnpc3.L\|UniProtKB=A0A1L8GN60	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-920577\|UniProtKB=Q07G30	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000005694.2\|UniProtKB=H2LM89	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-060312-35\|UniProtKB=F1Q8J0	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000007986.1\|UniProtKB=W5MMU1	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000021276.1\|UniProtKB=H2XSI8	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118414128\|UniProtKB=A0A9J7L0D4	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC577891\|UniProtKB=A0A7M7RD02	Strongylocentrotus purpuratus	LDO
DROME\|FlyBase=FBgn0265184\|UniProtKB=A0A0B4LGA2	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP005296\|UniProtKB=Q5TWC9	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC007748\|UniProtKB=D2A1F1	Tribolium castaneum	O
TRICA\|EnsemblGenome=TC010372\|UniProtKB=D6WGC1	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_313833\|UniProtKB=E9G5E7	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW012575\|UniProtKB=B7QBY1	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG65555\|UniProtKB=T1FY95	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g234681\|UniProtKB=A7RZI8	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG58601\|UniProtKB=B3S354	Trichoplax adhaerens	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_86091\|UniProtKB=F4NX39	Batrachochytrium dendrobatidis	LDO
DICDI\|dictyBase=DDB_G0270734\|UniProtKB=Q55CC1	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_149032\|UniProtKB=F0ZCN0	Dictyostelium purpureum	LDO
AMBTC\|EnsemblGenome=AMTR_s00038p00125360\|UniProtKB=U5CWQ2	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_13G00310\|UniProtKB=A0A0K9Q045	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma09_g17030\|UniProtKB=A0A804KKG2	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_035599mg\|UniProtKB=K4A9P3	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3001G386100\|UniProtKB=C5X1Q3	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb015560\|UniProtKB=B4FG83	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os03g0326600\|UniProtKB=Q10M15	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_2g18227v3\|UniProtKB=I1HH19	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.1HG0046830\|UniProtKB=A0A8I6WJ31	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS1D02G171900\|UniProtKB=A0A3B5ZTG3	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS1B02G185400\|UniProtKB=A0A3B5YVZ9	Triticum aestivum	LDO
WHEAT\|EnsemblGenome=TraesCS6D02G086800\|UniProtKB=A0A3B6QDM1	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6B02G124200\|UniProtKB=A0A3B6PHS4	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS6A02G096000\|UniProtKB=A0A3B6NL83	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS1A02G171500\|UniProtKB=A0A3B5XYX4	Triticum aestivum	O
SPIOL\|Gene=LOC110776264\|UniProtKB=A0A9R0JJD5	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr02g0079741\|UniProtKB=A0A251VHV5	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C600313210\|UniProtKB=A0A9R1V8B4	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a010145mg\|UniProtKB=A0A022QCY6	Erythranthe guttata	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400001606\|UniProtKB=M0ZMU2	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc01g110820.3\|UniProtKB=A0A3Q7ETT1	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107777363\|UniProtKB=A0A1S3YKT0	Nicotiana tabacum	O
TOBAC\|Gene=LOC107777783\|UniProtKB=A0A1S3YN98	Nicotiana tabacum	O
TOBAC\|Gene=LOC107819191\|UniProtKB=A0A1S4CIC8	Nicotiana tabacum	LDO
VITVI\|Gene_OrderedLocusName=VIT_05s0102g00500\|UniProtKB=F6HYT0	Vitis vinifera	O
VITVI\|EnsemblGenome=Vitvi05g01189\|UniProtKB=D7SNK2	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_A02076\|UniProtKB=A0A059DGY1	Eucalyptus grandis	LDO
BRACM\|EnsemblGenome=Bra018574\|UniProtKB=M4DPY3	Brassica campestris	LDO
ARATH\|TAIR=locus=2195311\|UniProtKB=Q8RWV8	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107961890\|UniProtKB=A0A1U8PTD7	Gossypium hirsutum	O
GOSHI\|Gene=LOC107892375\|UniProtKB=A0A1U8IAY8	Gossypium hirsutum	LDO
POPTR\|Gene_ORFName=POPTR_019G031701\|UniProtKB=A0A3N7GB13	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_013G054300v3\|UniProtKB=B9I5U9	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_08G148100\|UniProtKB=A0A2C9VGF6	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_1122320\|UniProtKB=B9SHJ5	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_16G042800\|UniProtKB=I1ML41	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_19G109200\|UniProtKB=A0A0R0EL90	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_7g085290\|UniProtKB=G7KZE1	Medicago truncatula	LDO
JUGRE\|Gene=LOC109001840\|UniProtKB=A0A6P9F735	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_6G118290\|UniProtKB=A0A0A0KCT1	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_6G097200\|UniProtKB=M5W4H5	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_235257\|UniProtKB=D8SVF8	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c25_8310\|UniProtKB=A9S5W6	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c5_17010\|UniProtKB=A0A2K1KK24	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0054s0019\|UniProtKB=A0A2R6WVN5	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_004020110\|UniProtKB=A0A1Y1IAY2	Klebsormidium nitens	O
KLENI\|Gene_ORFName=KFL_001550020\|UniProtKB=A0A1Y1I0X7	Klebsormidium nitens	LDO