PANTHER Gene Information

Gene Symbol(s):

rnpc2l

Organism:

Danio rerio

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Gene Name:

RNA binding motif protein 39b isoform X1

Gene ID:

ZDB-GENE-050327-97

Protein ID:

Q58ER0

Persistent Id:

PTN000611720

Alternate Ids:

Q58ER0_DANRE(UniProtKB-ID)	Q58ER0(Synonym)
541556(GeneID)	XP_005167279(refSeq)
ENSDARG00000041853(Ensembl)	528488279(GI)
CR550308(EMBL)	AAH91794(EMBL-CDS)
ENSDARP00000061327(Ensembl_PRO)	ZDB-GENE-050327-97(ZFIN)
ENSDART00000178556(Ensembl_TRS)
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PANTHER Classification

PANTHER Family:	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED (PTHR48036)
PANTHER Subfamily:	RNA BINDING MOTIF PROTEIN 39B ISOFORM X1-RELATED (PTHR48036:SF6)
PANTHER GO-slim Molecular Function:	ribonucleoprotein complex binding
PANTHER GO-slim Biological Process:
PANTHER GO-slim Cellular Component:
PANTHER protein class:	RNA splicing factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	nucleic acid binding, RNA binding, U1 snRNP binding
GO BP Complete:	mRNA processing
GO CC Complete:	nucleus

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

RND3 GTPase cycle, RND2 GTPase cycle, RHO GTPase cycle, Signaling by Rho GTPases, RND1 GTPase cycle, Signaling by Rho GTPases, Miro GTPases and RHOBTB3, Signal Transduction

Orthologs

ID	Organism	Type
HUMAN\|HGNC=20155\|UniProtKB=Q86U06	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000006151.7\|UniProtKB=K7DIC9	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000015707.3\|UniProtKB=G3RI38	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000018381.4\|UniProtKB=F7H1B7	Macaca mulatta	O
BOVIN\|Ensembl=ENSBTAG00000038333.2\|UniProtKB=A0A3Q1LKV3	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000026700.4\|UniProtKB=I3LPP8	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000009910.4\|UniProtKB=A0A5F5PVA7	Equus caballus	O
CANLF\|Ensembl=ENSCAFG00845002223.1\|UniProtKB=A0A8I3MNV4	Canis lupus familiaris	O
MONDO\|Ensembl=ENSMODG00000024448.4\|UniProtKB=A0A5F8GKK0	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000038905.1\|UniProtKB=A0A6I8P999	Ornithorhynchus anatinus	O
ANOCA\|Ensembl=ENSACAG00000001569.4\|UniProtKB=H9G5F2	Anolis carolinensis	O
XENLA\|Gene=rbm23.L\|UniProtKB=Q6GNX7	Xenopus laevis	O
XENTR\|Xenbase=XB-GENE-494491\|UniProtKB=F6WH71	Xenopus tropicalis	O
PANTR\|Ensembl=ENSPTRG00000049437.1\|UniProtKB=A0A2I3T3W6	Pan troglodytes	O
PANTR\|Ensembl=ENSPTRG00000046501.1\|UniProtKB=A0A2I3RZJ6	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000036253.1\|UniProtKB=A0A2I2Y826	Gorilla gorilla gorilla	O
HUMAN\|HGNC=28887\|UniProtKB=Q9Y2U8	Homo sapiens	O
HUMAN\|HGNC=15923\|UniProtKB=Q14498	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000049720.1\|UniProtKB=K7BIV1	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000003950.3\|UniProtKB=A0A2I2Y5B1	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000031284.3\|UniProtKB=H9EMA5	Macaca mulatta	O
MOUSE\|MGI=MGI=2157953\|UniProtKB=Q8VH51	Mus musculus	O
BOVIN\|Ensembl=ENSBTAG00000003949.6\|UniProtKB=A0A3Q1LWZ4	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000007309.5\|UniProtKB=A0A287BAQ0	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000013423.4\|UniProtKB=F7AKJ4	Equus caballus	O
HORSE\|Ensembl=ENSECAG00000013423.4\|UniProtKB=F7AKJ4	Equus caballus	O
FELCA\|Ensembl=ENSFCAG00000003233.6\|UniProtKB=M3WUX8	Felis catus	O
CANLF\|Ensembl=ENSCAFG00845022632.1\|UniProtKB=A0A8I3PQ80	Canis lupus familiaris	O
MONDO\|Ensembl=ENSMODG00000001557.3\|UniProtKB=F7BX84	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000006045.3\|UniProtKB=F6QKF9	Ornithorhynchus anatinus	O
CHICK\|Ensembl=ENSGALG00010022199.1\|UniProtKB=E1BRU3	Gallus gallus	O
ANOCA\|Ensembl=ENSACAG00000006436.4\|UniProtKB=G1KFG3	Anolis carolinensis	O
XENLA\|Gene=MGC81970\|UniProtKB=A0A1L8EMM7	Xenopus laevis	O
XENLA\|Gene=rbm39.L\|UniProtKB=A0A8J0TUF5	Xenopus laevis	O
XENTR\|Xenbase=XB-GENE-492226\|UniProtKB=Q566M5	Xenopus tropicalis	O
ORYLA\|Ensembl=ENSORLG00000010370.2\|UniProtKB=H2M3J3	Oryzias latipes	O
ORYLA\|Ensembl=ENSORLG00000009919.2\|UniProtKB=H2M208	Oryzias latipes	O
LEPOC\|Ensembl=ENSLOCG00000006562.1\|UniProtKB=W5MHR8	lepisosteus oculatus	O
CIOIN\|Ensembl=ENSCING00000020692.1\|UniProtKB=A0A1W5BDZ3	Ciona intestinalis	O
BRAFL\|Gene=LOC118417302\|UniProtKB=A0A9J7L9J3	Branchiostoma floridae	O
STRPU\|EnsemblGenome=LOC762470\|UniProtKB=A0A7M7G095	Strongylocentrotus purpuratus	O
DROME\|FlyBase=FBgn0031883\|UniProtKB=Q9VM49	Drosophila melanogaster	O
ANOGA\|EnsemblGenome=AGAP008433\|UniProtKB=A0A1S4GYY7	Anopheles gambiae	O
TRICA\|EnsemblGenome=TC014444\|UniProtKB=D6WLZ9	Tribolium castaneum	O
DAPPU\|EnsemblGenome=DAPPUDRAFT_194972\|UniProtKB=E9GAE9	Daphnia pulex	O
HELRO\|EnsemblGenome=HelroG114532\|UniProtKB=T1EG25	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG109933\|UniProtKB=T1EEX5	helobdella robusta	O
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g216000\|UniProtKB=A7SQW0	Nematostella vectensis	O
TRIAD\|EnsemblGenome=TriadG37071\|UniProtKB=B3RJ64	Trichoplax adhaerens	O
YARLI\|EnsemblGenome=YALI0_E23628g\|UniProtKB=Q6C4U4	Yarrowia lipolytica	O
EMENI\|EnsemblGenome=ANIA_00917\|UniProtKB=Q5BEW3	Emericella nidulans	O
ASPFU\|EnsemblGenome=AFUA_3G09620\|UniProtKB=Q4WXI4	Neosartorya fumigata	O
ASPFU\|EnsemblGenome=AFUA_1G15810\|UniProtKB=Q4WRM3	Neosartorya fumigata	O
NEUCR\|EnsemblGenome=NCU03491\|UniProtKB=Q7RVN7	Neurospora crassa	O
SCLS1\|EnsemblGenome=SS1G_00444\|UniProtKB=A7E570	Sclerotinia sclerotiorum	O
PHANO\|EnsemblGenome=SNOG_02393\|UniProtKB=Q0V0S1	Phaeosphaeria nodorum	O
SCHPO\|PomBase=SPAC19G12.07c\|UniProtKB=O13845	Schizosaccharomyces pombe	O
SCHJY\|EnsemblGenome=SJAG_04914\|UniProtKB=B6K838	Schizosaccharomyces japonicus	O
USTMA\|EnsemblGenome=UMAG_00164\|UniProtKB=A0A0D1E8D0	Ustilago maydis	O
PUCGT\|EnsemblGenome=PGTG_18139\|UniProtKB=E3L674	Puccinia graminis	O
PUCGT\|EnsemblGenome=PGTG_22242\|UniProtKB=H6QTX1	Puccinia graminis	O
DICPU\|EnsemblGenome=DICPUDRAFT_74732\|UniProtKB=F0Z8L0	Dictyostelium purpureum	O
PLAF7\|EnsemblGenome=PF3D7_1321700\|UniProtKB=Q8IE99	Plasmodium falciparum	O
PHYRM\|Gene=H3HBL5_PHYRM\|UniProtKB=H3HBL5	Phytophthora ramorum	O
AMBTC\|EnsemblGenome=AMTR_s00017p00234440\|UniProtKB=W1PL18	Amborella trichopoda	O
MUSAM\|EnsemblGenome=Ma05_g01020\|UniProtKB=A0A804IZI6	Musa acuminata subsp. malaccensis	O
NELNU\|Gene_ORFName=HUJ06_023965\|UniProtKB=A0A1U7ZE55	Nelumbo nucifera	O
SPIOL\|Gene=LOC110793429\|UniProtKB=A0A9R0K0I9	Spinacia oleracea	O
HELAN\|EnsemblGenome=HanXRQr2_Chr14g0648001\|UniProtKB=A0A251SI01	Helianthus annuus	O
LACSA\|Gene_ORFName=LSAT_V11C200074010\|UniProtKB=A0A9R1XTB1	Lactuca sativa	O
HELAN\|Gene_ORFName=HanXRQr2_Chr07g0289801\|UniProtKB=A0A9K3IJV9	Helianthus annuus	O
LACSA\|Gene_ORFName=LSAT_V11C500242750\|UniProtKB=A0A9R1X6M5	Lactuca sativa	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a0042611mg\|UniProtKB=A0A022QX70	Erythranthe guttata	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a002916mg\|UniProtKB=A0A022QC36	Erythranthe guttata	O
CAPAN\|EnsemblGenome=T459_30060\|UniProtKB=A0A1U8EVI1	Capsicum annuum	O
SOLLC\|EnsemblGenome=Solyc11g005170.2\|UniProtKB=A0A3Q7IPR4	Solanum lycopersicum	O
TOBAC\|Gene=LOC107827304\|UniProtKB=A0A1S4D8W9	Nicotiana tabacum	O
TOBAC\|Gene=LOC107827897\|UniProtKB=A0A1S4DB81	Nicotiana tabacum	O
VITVI\|EnsemblGenome=Vitvi07g01877\|UniProtKB=D7SWA2	Vitis vinifera	O
BRANA\|Gene_ORFName=GSBRNA2T00016082001\|UniProtKB=A0A078G9D3	Brassica napus	O
BRACM\|EnsemblGenome=Bra009076\|UniProtKB=M4CXX9	Brassica campestris	O
BRANA\|Gene_ORFName=DARMORV10_C02P04130.1\|UniProtKB=A0A078HNI0	Brassica napus	O
BRACM\|EnsemblGenome=Bra028612\|UniProtKB=M4EIJ7	Brassica campestris	O
ARATH\|TAIR=locus=2178198\|UniProtKB=Q93Y25	Arabidopsis thaliana	O
THECC\|EnsemblGenome=TCM_001305\|UniProtKB=A0A061DIL0	Theobroma cacao	O
CITSI\|Gene_ORFName=CISIN_1g0063802mg\|UniProtKB=A0A067F0X2	Citrus sinensis	O
POPTR\|EnsemblGenome=POPTR_007G009800v3\|UniProtKB=A0A2K1ZM68	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_005G148100v3\|UniProtKB=B9H6Q0	Populus trichocarpa	O
SOYBN\|EnsemblGenome=GLYMA_05G187000\|UniProtKB=I1K4U6	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_08G145400\|UniProtKB=I1KTD7	Glycine max	O
MEDTR\|EnsemblGenome=MTR_8g092550\|UniProtKB=G7LC87	Medicago truncatula	O
SOYBN\|EnsemblGenome=GLYMA_06G148700\|UniProtKB=I1KBE2	Glycine max	O
MEDTR\|EnsemblGenome=MTR_3g095230\|UniProtKB=G7JAD6	Medicago truncatula	O
JUGRE\|EnsemblGenome=Jr10_10820\|UniProtKB=A0A2I4GQQ7	Juglans regia	O
CUCSA\|EnsemblGenome=Csa_6G486730\|UniProtKB=A0A0A0KFB3	Cucumis sativus	O
PRUPE\|EnsemblGenome=PRUPE_6G161000\|UniProtKB=M5WL68	Prunus persica	O
AMBTC\|EnsemblGenome=AMTR_s00001p00270600\|UniProtKB=W1NM28	Amborella trichopoda	O
MUSAM\|EnsemblGenome=Ma11_g15270\|UniProtKB=A0A804L841	Musa acuminata subsp. malaccensis	O
SETIT\|EnsemblGenome=SETIT_035051mg\|UniProtKB=K4A845	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3001G237700\|UniProtKB=C5X0H7	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb222690\|UniProtKB=A0A096R1K6	Zea mays	O
MAIZE\|EnsemblGenome=Zm00001eb047310\|UniProtKB=B4FWC4	Zea mays	O
BRADI\|EnsemblGenome=BRADI_3g27480v3\|UniProtKB=I1I499	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.1HG0038190\|UniProtKB=F2EH36	Hordeum vulgare subsp. vulgare	O
SETIT\|EnsemblGenome=SETIT_035008mg\|UniProtKB=K4A802	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3001G500300\|UniProtKB=C5WXU5	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb403170\|UniProtKB=A0A1D6PK21	Zea mays	O
BRADI\|EnsemblGenome=BRADI_1g74820v3\|UniProtKB=I1H9L7	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.4HG0400930\|UniProtKB=A0A8I6XHJ9	Hordeum vulgare subsp. vulgare	O
NELNU\|Gene_ORFName=HUJ06_016023\|UniProtKB=A0A1U8ASI2	Nelumbo nucifera	O
SPIOL\|Gene=LOC110777391\|UniProtKB=A0A9R0JK43	Spinacia oleracea	O
HELAN\|EnsemblGenome=HanXRQr2_Chr12g0548631\|UniProtKB=A0A251T319	Helianthus annuus	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a003198mg\|UniProtKB=A0A022RCL6	Erythranthe guttata	O
EUCGR\|EnsemblGenome=EUGRSUZ_I01450\|UniProtKB=A0A059AQ83	Eucalyptus grandis	O
ARATH\|TAIR=locus=2039400\|UniProtKB=F4ILE1	Arabidopsis thaliana	O
GOSHI\|Gene=LOC107927943\|UniProtKB=A0A1U8LJ74	Gossypium hirsutum	O
GOSHI\|Gene=LOC107928875\|UniProtKB=A0A1U8LR08	Gossypium hirsutum	O
GOSHI\|Gene=LOC107908645\|UniProtKB=A0A1U8JM59	Gossypium hirsutum	O
GOSHI\|Gene=LOC107936976\|UniProtKB=A0A1U8MER8	Gossypium hirsutum	O
CITSI\|Gene_ORFName=CISIN_1g006398mg\|UniProtKB=A0A067FLC5	Citrus sinensis	O
POPTR\|EnsemblGenome=POPTR_009G137200v3\|UniProtKB=A0A2K1Z7J6	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_004G177000v3\|UniProtKB=B9H1K1	Populus trichocarpa	O
MANES\|EnsemblGenome=MANES_04G071600\|UniProtKB=A0A2C9W2U4	Manihot esculenta	O
RICCO\|Gene_ORFName=RCOM_1646720\|UniProtKB=B9RRL9	Ricinus communis	O
SOYBN\|EnsemblGenome=GLYMA_20G107100\|UniProtKB=I1NF91	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_10G282400\|UniProtKB=K7LLY3	Glycine max	O
JUGRE\|EnsemblGenome=Jr13_09330\|UniProtKB=A0A2I4EWK4	Juglans regia	O
JUGRE\|EnsemblGenome=Jr13_09350\|UniProtKB=A0A2I4EWK2	Juglans regia	O
CUCSA\|EnsemblGenome=Csa_7G014530\|UniProtKB=A0A0A0K4Q5	Cucumis sativus	O
PRUPE\|EnsemblGenome=PRUPE_8G167800\|UniProtKB=A0A251MYZ2	Prunus persica	O
SELML\|EnsemblGenome=SELMODRAFT_151471\|UniProtKB=D8S0D1	Selaginella moellendorffii	O
PHYPA\|EnsemblGenome=Pp3c7_5140\|UniProtKB=A0A7I4FTW8	Physcomitrella patens	O
PHYPA\|EnsemblGenome=Pp3c11_26720\|UniProtKB=A0A2K1JWF2	Physcomitrella patens	O
MARPO\|EnsemblGenome=MARPO_0067s0005\|UniProtKB=A0A2R6WPY6	Marchantia polymorpha	O
KLENI\|Gene_ORFName=KFL_000670210\|UniProtKB=A0A1Y1HS77	Klebsormidium nitens	O