PANTHER Gene Information

Gene Symbol(s):

rbm39

Organism:

Xenopus tropicalis

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Gene Name:

RNA binding motif protein 39

Gene ID:

XB-GENE-492226

Protein ID:

Q566M5

Persistent Id:

PTN008729837

Alternate Ids:

Q566M5(Synonym)	549542(GeneID)
NM_001016788(refSeq)	BC093451(EMBL)
62201342(GI)	Q566M5_XENTR(UniProtKB-ID)
AAH93451(EMBL-CDS)
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PANTHER Classification

PANTHER Family:	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED (PTHR48036)
PANTHER Subfamily:	INNER NUCLEAR MEMBRANE PROTEIN MAN1-RELATED (PTHR48036:SF10)
PANTHER GO-slim Molecular Function:	ribonucleoprotein complex binding
PANTHER GO-slim Biological Process:
PANTHER GO-slim Cellular Component:
PANTHER protein class:	RNA splicing factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	RNA binding, U1 snRNP binding
GO BP Complete:	mRNA processing
GO CC Complete:	nucleus

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Signal Transduction, Signaling by Rho GTPases, Cell Cycle, RND3 GTPase cycle, RND1 GTPase cycle, Signaling by Rho GTPases, Miro GTPases and RHOBTB3, Mitotic Prophase, M Phase, RHOG GTPase cycle, RHO GTPase cycle, Cell Cycle, Mitotic, RAC2 GTPase cycle, RAC1 GTPase cycle, Depolymerization of the Nuclear Lamina, RAC3 GTPase cycle, Nuclear Envelope Breakdown

Orthologs

ID	Organism	Type
PANTR\|Ensembl=ENSPTRG00000049437.1\|UniProtKB=A0A2I3T3W6	Pan troglodytes	O
PANTR\|Ensembl=ENSPTRG00000046501.1\|UniProtKB=A0A2I3RZJ6	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000036253.1\|UniProtKB=A0A2I2Y826	Gorilla gorilla gorilla	O
HUMAN\|HGNC=28887\|UniProtKB=Q9Y2U8	Homo sapiens	O
HUMAN\|HGNC=15923\|UniProtKB=Q14498	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000049720.1\|UniProtKB=K7BIV1	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000003950.3\|UniProtKB=A0A2I2Y5B1	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000031284.3\|UniProtKB=H9EMA5	Macaca mulatta	LDO
MOUSE\|MGI=MGI=2157953\|UniProtKB=Q8VH51	Mus musculus	LDO
BOVIN\|Ensembl=ENSBTAG00000003949.6\|UniProtKB=A0A3Q1LWZ4	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000007309.5\|UniProtKB=A0A287BAQ0	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000013423.4\|UniProtKB=F7AKJ4	Equus caballus	LDO
HORSE\|Ensembl=ENSECAG00000013423.4\|UniProtKB=F7AKJ4	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000003233.6\|UniProtKB=M3WUX8	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845022632.1\|UniProtKB=A0A8I3PQ80	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000001557.3\|UniProtKB=F7BX84	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000006045.3\|UniProtKB=F6QKF9	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010022199.1\|UniProtKB=E1BRU3	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000006436.4\|UniProtKB=G1KFG3	Anolis carolinensis	LDO
XENLA\|Gene=MGC81970\|UniProtKB=A0A1L8EMM7	Xenopus laevis	O
XENLA\|Gene=rbm39.L\|UniProtKB=A0A8J0TUF5	Xenopus laevis	LDO
ORYLA\|Ensembl=ENSORLG00000010370.2\|UniProtKB=H2M3J3	Oryzias latipes	LDO
ORYLA\|Ensembl=ENSORLG00000009919.2\|UniProtKB=H2M208	Oryzias latipes	O
DANRE\|ZFIN=ZDB-GENE-050327-97\|UniProtKB=Q58ER0	Danio rerio	O
DANRE\|ZFIN=ZDB-GENE-040426-2852\|UniProtKB=Q803H1	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000006562.1\|UniProtKB=W5MHR8	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000020692.1\|UniProtKB=A0A1W5BDZ3	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118417302\|UniProtKB=A0A9J7L9J3	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC762470\|UniProtKB=A0A7M7G095	Strongylocentrotus purpuratus	LDO
DROME\|FlyBase=FBgn0031883\|UniProtKB=Q9VM49	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP008433\|UniProtKB=A0A1S4GYY7	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC014444\|UniProtKB=D6WLZ9	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_194972\|UniProtKB=E9GAE9	Daphnia pulex	LDO
HELRO\|EnsemblGenome=HelroG114532\|UniProtKB=T1EG25	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG109933\|UniProtKB=T1EEX5	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g216000\|UniProtKB=A7SQW0	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG37071\|UniProtKB=B3RJ64	Trichoplax adhaerens	LDO
YARLI\|EnsemblGenome=YALI0_E23628g\|UniProtKB=Q6C4U4	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_00917\|UniProtKB=Q5BEW3	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_3G09620\|UniProtKB=Q4WXI4	Neosartorya fumigata	O
ASPFU\|EnsemblGenome=AFUA_1G15810\|UniProtKB=Q4WRM3	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU03491\|UniProtKB=Q7RVN7	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_00444\|UniProtKB=A7E570	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_02393\|UniProtKB=Q0V0S1	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPAC19G12.07c\|UniProtKB=O13845	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_04914\|UniProtKB=B6K838	Schizosaccharomyces japonicus	LDO
USTMA\|EnsemblGenome=UMAG_00164\|UniProtKB=A0A0D1E8D0	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_18139\|UniProtKB=E3L674	Puccinia graminis	LDO
PUCGT\|EnsemblGenome=PGTG_22242\|UniProtKB=H6QTX1	Puccinia graminis	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_74732\|UniProtKB=F0Z8L0	Dictyostelium purpureum	LDO
PLAF7\|EnsemblGenome=PF3D7_1321700\|UniProtKB=Q8IE99	Plasmodium falciparum	LDO
PHYRM\|Gene=H3HBL5_PHYRM\|UniProtKB=H3HBL5	Phytophthora ramorum	LDO
AMBTC\|EnsemblGenome=AMTR_s00017p00234440\|UniProtKB=W1PL18	Amborella trichopoda	O
MUSAM\|EnsemblGenome=Ma05_g01020\|UniProtKB=A0A804IZI6	Musa acuminata subsp. malaccensis	O
NELNU\|Gene_ORFName=HUJ06_023965\|UniProtKB=A0A1U7ZE55	Nelumbo nucifera	O
SPIOL\|Gene=LOC110793429\|UniProtKB=A0A9R0K0I9	Spinacia oleracea	O
HELAN\|EnsemblGenome=HanXRQr2_Chr14g0648001\|UniProtKB=A0A251SI01	Helianthus annuus	O
LACSA\|Gene_ORFName=LSAT_V11C200074010\|UniProtKB=A0A9R1XTB1	Lactuca sativa	O
HELAN\|Gene_ORFName=HanXRQr2_Chr07g0289801\|UniProtKB=A0A9K3IJV9	Helianthus annuus	O
LACSA\|Gene_ORFName=LSAT_V11C500242750\|UniProtKB=A0A9R1X6M5	Lactuca sativa	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a0042611mg\|UniProtKB=A0A022QX70	Erythranthe guttata	O
ERYGU\|Gene_ORFName=MIMGU_mgv1a002916mg\|UniProtKB=A0A022QC36	Erythranthe guttata	O
CAPAN\|EnsemblGenome=T459_30060\|UniProtKB=A0A1U8EVI1	Capsicum annuum	O
SOLLC\|EnsemblGenome=Solyc11g005170.2\|UniProtKB=A0A3Q7IPR4	Solanum lycopersicum	O
TOBAC\|Gene=LOC107827304\|UniProtKB=A0A1S4D8W9	Nicotiana tabacum	O
TOBAC\|Gene=LOC107827897\|UniProtKB=A0A1S4DB81	Nicotiana tabacum	O
VITVI\|EnsemblGenome=Vitvi07g01877\|UniProtKB=D7SWA2	Vitis vinifera	O
BRANA\|Gene_ORFName=GSBRNA2T00016082001\|UniProtKB=A0A078G9D3	Brassica napus	O
BRACM\|EnsemblGenome=Bra009076\|UniProtKB=M4CXX9	Brassica campestris	O
BRANA\|Gene_ORFName=DARMORV10_C02P04130.1\|UniProtKB=A0A078HNI0	Brassica napus	O
BRACM\|EnsemblGenome=Bra028612\|UniProtKB=M4EIJ7	Brassica campestris	O
ARATH\|TAIR=locus=2178198\|UniProtKB=Q93Y25	Arabidopsis thaliana	O
THECC\|EnsemblGenome=TCM_001305\|UniProtKB=A0A061DIL0	Theobroma cacao	O
CITSI\|Gene_ORFName=CISIN_1g0063802mg\|UniProtKB=A0A067F0X2	Citrus sinensis	O
POPTR\|EnsemblGenome=POPTR_007G009800v3\|UniProtKB=A0A2K1ZM68	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_005G148100v3\|UniProtKB=B9H6Q0	Populus trichocarpa	O
SOYBN\|EnsemblGenome=GLYMA_05G187000\|UniProtKB=I1K4U6	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_08G145400\|UniProtKB=I1KTD7	Glycine max	O
MEDTR\|EnsemblGenome=MTR_8g092550\|UniProtKB=G7LC87	Medicago truncatula	O
SOYBN\|EnsemblGenome=GLYMA_06G148700\|UniProtKB=I1KBE2	Glycine max	O
MEDTR\|EnsemblGenome=MTR_3g095230\|UniProtKB=G7JAD6	Medicago truncatula	O
JUGRE\|EnsemblGenome=Jr10_10820\|UniProtKB=A0A2I4GQQ7	Juglans regia	O
CUCSA\|EnsemblGenome=Csa_6G486730\|UniProtKB=A0A0A0KFB3	Cucumis sativus	O
PRUPE\|EnsemblGenome=PRUPE_6G161000\|UniProtKB=M5WL68	Prunus persica	O
AMBTC\|EnsemblGenome=AMTR_s00001p00270600\|UniProtKB=W1NM28	Amborella trichopoda	LDO
MUSAM\|EnsemblGenome=Ma11_g15270\|UniProtKB=A0A804L841	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_035051mg\|UniProtKB=K4A845	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3001G237700\|UniProtKB=C5X0H7	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb222690\|UniProtKB=A0A096R1K6	Zea mays	O
MAIZE\|EnsemblGenome=Zm00001eb047310\|UniProtKB=B4FWC4	Zea mays	O
BRADI\|EnsemblGenome=BRADI_3g27480v3\|UniProtKB=I1I499	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.1HG0038190\|UniProtKB=F2EH36	Hordeum vulgare subsp. vulgare	O
SETIT\|EnsemblGenome=SETIT_035008mg\|UniProtKB=K4A802	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3001G500300\|UniProtKB=C5WXU5	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb403170\|UniProtKB=A0A1D6PK21	Zea mays	LDO
BRADI\|EnsemblGenome=BRADI_1g74820v3\|UniProtKB=I1H9L7	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.4HG0400930\|UniProtKB=A0A8I6XHJ9	Hordeum vulgare subsp. vulgare	LDO
NELNU\|Gene_ORFName=HUJ06_016023\|UniProtKB=A0A1U8ASI2	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110777391\|UniProtKB=A0A9R0JK43	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr12g0548631\|UniProtKB=A0A251T319	Helianthus annuus	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a003198mg\|UniProtKB=A0A022RCL6	Erythranthe guttata	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_I01450\|UniProtKB=A0A059AQ83	Eucalyptus grandis	LDO
ARATH\|TAIR=locus=2039400\|UniProtKB=F4ILE1	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107927943\|UniProtKB=A0A1U8LJ74	Gossypium hirsutum	O
GOSHI\|Gene=LOC107928875\|UniProtKB=A0A1U8LR08	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107908645\|UniProtKB=A0A1U8JM59	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107936976\|UniProtKB=A0A1U8MER8	Gossypium hirsutum	O
CITSI\|Gene_ORFName=CISIN_1g006398mg\|UniProtKB=A0A067FLC5	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_009G137200v3\|UniProtKB=A0A2K1Z7J6	Populus trichocarpa	O
POPTR\|EnsemblGenome=POPTR_004G177000v3\|UniProtKB=B9H1K1	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_04G071600\|UniProtKB=A0A2C9W2U4	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_1646720\|UniProtKB=B9RRL9	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_20G107100\|UniProtKB=I1NF91	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_10G282400\|UniProtKB=K7LLY3	Glycine max	LDO
JUGRE\|EnsemblGenome=Jr13_09330\|UniProtKB=A0A2I4EWK4	Juglans regia	LDO
JUGRE\|EnsemblGenome=Jr13_09350\|UniProtKB=A0A2I4EWK2	Juglans regia	O
CUCSA\|EnsemblGenome=Csa_7G014530\|UniProtKB=A0A0A0K4Q5	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_8G167800\|UniProtKB=A0A251MYZ2	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_151471\|UniProtKB=D8S0D1	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c7_5140\|UniProtKB=A0A7I4FTW8	Physcomitrella patens	LDO
PHYPA\|EnsemblGenome=Pp3c11_26720\|UniProtKB=A0A2K1JWF2	Physcomitrella patens	O
MARPO\|EnsemblGenome=MARPO_0067s0005\|UniProtKB=A0A2R6WPY6	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_000670210\|UniProtKB=A0A1Y1HS77	Klebsormidium nitens	LDO