PANTHER Gene Information

Gene Symbol(s):

POPTR_004G177000

Organism:

Populus trichocarpa

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Gene Name:

RRM domain-containing protein

Gene ID:

POPTR_004G177000v3

Protein ID:

B9H1K1

Persistent Id:

PTN001923975

Alternate Ids:

XP_002306193(refSeq)	7453655(GeneID)
CM009293(EMBL)	566167219(GI)
POPTR_004G177000v3(Ensembl)	PNT41831(EMBL-CDS)
B9H1K1_POPTR(UniProtKB-ID)	B9H1K1(Synonym)
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PANTHER Classification

PANTHER Family:	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED (PTHR48036)
PANTHER Subfamily:	RNA BINDING MOTIF PROTEIN 39B ISOFORM X1-RELATED (PTHR48036:SF6)
PANTHER GO-slim Molecular Function:	ribonucleoprotein complex binding
PANTHER GO-slim Biological Process:
PANTHER GO-slim Cellular Component:
PANTHER protein class:	RNA splicing factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	RNA binding, U1 snRNP binding
GO BP Complete:	mRNA processing
GO CC Complete:	nucleus

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Orthologs

ID	Organism	Type
HUMAN\|HGNC=20155\|UniProtKB=Q86U06	Homo sapiens	O
PANTR\|Ensembl=ENSPTRG00000006151.7\|UniProtKB=K7DIC9	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000015707.3\|UniProtKB=G3RI38	Gorilla gorilla gorilla	O
MACMU\|Ensembl=ENSMMUG00000018381.4\|UniProtKB=F7H1B7	Macaca mulatta	O
BOVIN\|Ensembl=ENSBTAG00000038333.2\|UniProtKB=A0A3Q1LKV3	Bos taurus	O
PIG\|Ensembl=ENSSSCG00000026700.4\|UniProtKB=I3LPP8	Sus scrofa	O
HORSE\|Ensembl=ENSECAG00000009910.4\|UniProtKB=A0A5F5PVA7	Equus caballus	O
CANLF\|Ensembl=ENSCAFG00845002223.1\|UniProtKB=A0A8I3MNV4	Canis lupus familiaris	O
MONDO\|Ensembl=ENSMODG00000024448.4\|UniProtKB=A0A5F8GKK0	Monodelphis domestica	O
ORNAN\|Ensembl=ENSOANG00000038905.1\|UniProtKB=A0A6I8P999	Ornithorhynchus anatinus	O
ANOCA\|Ensembl=ENSACAG00000001569.4\|UniProtKB=H9G5F2	Anolis carolinensis	O
XENLA\|Gene=rbm23.L\|UniProtKB=Q6GNX7	Xenopus laevis	O
XENTR\|Xenbase=XB-GENE-494491\|UniProtKB=F6WH71	Xenopus tropicalis	O
PANTR\|Ensembl=ENSPTRG00000049437.1\|UniProtKB=A0A2I3T3W6	Pan troglodytes	O
PANTR\|Ensembl=ENSPTRG00000046501.1\|UniProtKB=A0A2I3RZJ6	Pan troglodytes	O
GORGO\|Ensembl=ENSGGOG00000036253.1\|UniProtKB=A0A2I2Y826	Gorilla gorilla gorilla	O
HUMAN\|HGNC=28887\|UniProtKB=Q9Y2U8	Homo sapiens	O
HUMAN\|HGNC=15923\|UniProtKB=Q14498	Homo sapiens	LDO
PANTR\|Ensembl=ENSPTRG00000049720.1\|UniProtKB=K7BIV1	Pan troglodytes	LDO
GORGO\|Ensembl=ENSGGOG00000003950.3\|UniProtKB=A0A2I2Y5B1	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000031284.3\|UniProtKB=H9EMA5	Macaca mulatta	LDO
MOUSE\|MGI=MGI=2157953\|UniProtKB=Q8VH51	Mus musculus	LDO
BOVIN\|Ensembl=ENSBTAG00000003949.6\|UniProtKB=A0A3Q1LWZ4	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000007309.5\|UniProtKB=A0A287BAQ0	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000013423.4\|UniProtKB=F7AKJ4	Equus caballus	LDO
HORSE\|Ensembl=ENSECAG00000013423.4\|UniProtKB=F7AKJ4	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000003233.6\|UniProtKB=M3WUX8	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845022632.1\|UniProtKB=A0A8I3PQ80	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000001557.3\|UniProtKB=F7BX84	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000006045.3\|UniProtKB=F6QKF9	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010022199.1\|UniProtKB=E1BRU3	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000006436.4\|UniProtKB=G1KFG3	Anolis carolinensis	LDO
XENLA\|Gene=MGC81970\|UniProtKB=A0A1L8EMM7	Xenopus laevis	O
XENLA\|Gene=rbm39.L\|UniProtKB=A0A8J0TUF5	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-492226\|UniProtKB=Q566M5	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000010370.2\|UniProtKB=H2M3J3	Oryzias latipes	LDO
ORYLA\|Ensembl=ENSORLG00000009919.2\|UniProtKB=H2M208	Oryzias latipes	O
DANRE\|ZFIN=ZDB-GENE-050327-97\|UniProtKB=Q58ER0	Danio rerio	O
DANRE\|ZFIN=ZDB-GENE-040426-2852\|UniProtKB=Q803H1	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000006562.1\|UniProtKB=W5MHR8	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000020692.1\|UniProtKB=A0A1W5BDZ3	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118417302\|UniProtKB=A0A9J7L9J3	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC762470\|UniProtKB=A0A7M7G095	Strongylocentrotus purpuratus	LDO
DROME\|FlyBase=FBgn0031883\|UniProtKB=Q9VM49	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP008433\|UniProtKB=A0A1S4GYY7	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC014444\|UniProtKB=D6WLZ9	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_194972\|UniProtKB=E9GAE9	Daphnia pulex	LDO
HELRO\|EnsemblGenome=HelroG114532\|UniProtKB=T1EG25	helobdella robusta	O
HELRO\|EnsemblGenome=HelroG109933\|UniProtKB=T1EEX5	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g216000\|UniProtKB=A7SQW0	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG37071\|UniProtKB=B3RJ64	Trichoplax adhaerens	LDO
YARLI\|EnsemblGenome=YALI0_E23628g\|UniProtKB=Q6C4U4	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_00917\|UniProtKB=Q5BEW3	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_3G09620\|UniProtKB=Q4WXI4	Neosartorya fumigata	O
ASPFU\|EnsemblGenome=AFUA_1G15810\|UniProtKB=Q4WRM3	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU03491\|UniProtKB=Q7RVN7	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_00444\|UniProtKB=A7E570	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_02393\|UniProtKB=Q0V0S1	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPAC19G12.07c\|UniProtKB=O13845	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_04914\|UniProtKB=B6K838	Schizosaccharomyces japonicus	LDO
USTMA\|EnsemblGenome=UMAG_00164\|UniProtKB=A0A0D1E8D0	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_18139\|UniProtKB=E3L674	Puccinia graminis	LDO
PUCGT\|EnsemblGenome=PGTG_22242\|UniProtKB=H6QTX1	Puccinia graminis	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_74732\|UniProtKB=F0Z8L0	Dictyostelium purpureum	LDO
PLAF7\|EnsemblGenome=PF3D7_1321700\|UniProtKB=Q8IE99	Plasmodium falciparum	LDO
PHYRM\|Gene=H3HBL5_PHYRM\|UniProtKB=H3HBL5	Phytophthora ramorum	LDO
AMBTC\|EnsemblGenome=AMTR_s00001p00270600\|UniProtKB=W1NM28	Amborella trichopoda	LDO
MUSAM\|EnsemblGenome=Ma11_g15270\|UniProtKB=A0A804L841	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_035051mg\|UniProtKB=K4A845	Setaria italica	O
SORBI\|EnsemblGenome=SORBI_3001G237700\|UniProtKB=C5X0H7	Sorghum bicolor	O
MAIZE\|EnsemblGenome=Zm00001eb222690\|UniProtKB=A0A096R1K6	Zea mays	O
MAIZE\|EnsemblGenome=Zm00001eb047310\|UniProtKB=B4FWC4	Zea mays	O
BRADI\|EnsemblGenome=BRADI_3g27480v3\|UniProtKB=I1I499	Brachypodium distachyon	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.1HG0038190\|UniProtKB=F2EH36	Hordeum vulgare subsp. vulgare	O
SETIT\|EnsemblGenome=SETIT_035008mg\|UniProtKB=K4A802	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3001G500300\|UniProtKB=C5WXU5	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb403170\|UniProtKB=A0A1D6PK21	Zea mays	LDO
BRADI\|EnsemblGenome=BRADI_1g74820v3\|UniProtKB=I1H9L7	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.4HG0400930\|UniProtKB=A0A8I6XHJ9	Hordeum vulgare subsp. vulgare	LDO
NELNU\|Gene_ORFName=HUJ06_016023\|UniProtKB=A0A1U8ASI2	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110777391\|UniProtKB=A0A9R0JK43	Spinacia oleracea	LDO
HELAN\|EnsemblGenome=HanXRQr2_Chr12g0548631\|UniProtKB=A0A251T319	Helianthus annuus	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a003198mg\|UniProtKB=A0A022RCL6	Erythranthe guttata	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_I01450\|UniProtKB=A0A059AQ83	Eucalyptus grandis	LDO
ARATH\|TAIR=locus=2039400\|UniProtKB=F4ILE1	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107927943\|UniProtKB=A0A1U8LJ74	Gossypium hirsutum	O
GOSHI\|Gene=LOC107928875\|UniProtKB=A0A1U8LR08	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107908645\|UniProtKB=A0A1U8JM59	Gossypium hirsutum	LDO
GOSHI\|Gene=LOC107936976\|UniProtKB=A0A1U8MER8	Gossypium hirsutum	O
CITSI\|Gene_ORFName=CISIN_1g006398mg\|UniProtKB=A0A067FLC5	Citrus sinensis	LDO
MANES\|EnsemblGenome=MANES_04G071600\|UniProtKB=A0A2C9W2U4	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_1646720\|UniProtKB=B9RRL9	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_20G107100\|UniProtKB=I1NF91	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_10G282400\|UniProtKB=K7LLY3	Glycine max	LDO
JUGRE\|EnsemblGenome=Jr13_09330\|UniProtKB=A0A2I4EWK4	Juglans regia	LDO
JUGRE\|EnsemblGenome=Jr13_09350\|UniProtKB=A0A2I4EWK2	Juglans regia	O
CUCSA\|EnsemblGenome=Csa_7G014530\|UniProtKB=A0A0A0K4Q5	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_8G167800\|UniProtKB=A0A251MYZ2	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_151471\|UniProtKB=D8S0D1	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c7_5140\|UniProtKB=A0A7I4FTW8	Physcomitrella patens	LDO
PHYPA\|EnsemblGenome=Pp3c11_26720\|UniProtKB=A0A2K1JWF2	Physcomitrella patens	O
MARPO\|EnsemblGenome=MARPO_0067s0005\|UniProtKB=A0A2R6WPY6	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_000670210\|UniProtKB=A0A1Y1HS77	Klebsormidium nitens	LDO