PANTHER Gene Information

Gene Symbol(s):

Prpf4

Organism:

Rattus norvegicus

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Gene Name:

Pre-mRNA processing factor 4

Gene ID:

1311303

Protein ID:

D4A7J8

Persistent Id:

PTN000457253

Alternate Ids:

157820821(GI)	NP_001100129(refSeq)
298095(GeneID)	ENSRNOG00000014777(Ensembl)
ENSRNOT00000019910(Ensembl_TRS)	D4A7J8(Synonym)
ENSRNOP00000019910(Ensembl_PRO)	1311303(RGD)
D4A7J8_RAT(UniProtKB-ID)
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PANTHER Classification

PANTHER Family:	WD40 REPEAT PROTEIN (PTHR19846)
PANTHER Subfamily:	U4_U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP4 (PTHR19846:SF5)
PANTHER GO-slim Molecular Function:	snRNA binding
PANTHER GO-slim Biological Process:	mRNA splicing, via spliceosome
PANTHER GO-slim Cellular Component:	U4/U6 x U5 tri-snRNP complex
PANTHER protein class:	RNA splicing factor

Pathway Categories:

No pathway information available

GENE ONTOLOGY DATABASE ANNOTATIONS

Click to Expand...

GO MF Complete:	U6 snRNA binding, U4 snRNA binding
GO BP Complete:	biological_process, mRNA splicing, via spliceosome
GO CC Complete:	nucleus, nuclear speck, U4/U6 x U5 tri-snRNP complex, U4/U6 snRNP, Cajal body, spliceosomal snRNP complex, U2-type precatalytic spliceosome

REACTOME DATABASE ANNOTATIONS Click to Expand...

Reactome Pathways:

Processing of Capped Intron-Containing Pre-mRNA, mRNA Splicing - Major Pathway, Metabolism of RNA, mRNA Splicing

Orthologs

ID	Organism	Type
HUMAN\|HGNC=17349\|UniProtKB=O43172	Homo sapiens	LDO
GORGO\|Ensembl=ENSGGOG00000006943.3\|UniProtKB=G3QVM3	Gorilla gorilla gorilla	LDO
MACMU\|Ensembl=ENSMMUG00000005844.4\|UniProtKB=F6TT47	Macaca mulatta	LDO
MOUSE\|MGI=MGI=1917302\|UniProtKB=Q9DAW6	Mus musculus	LDO
BOVIN\|Ensembl=ENSBTAG00000004571\|UniProtKB=Q3MHE2	Bos taurus	LDO
PIG\|Ensembl=ENSSSCG00000024648.4\|UniProtKB=I3LDL8	Sus scrofa	LDO
HORSE\|Ensembl=ENSECAG00000007072.4\|UniProtKB=F7CKR6	Equus caballus	LDO
FELCA\|Ensembl=ENSFCAG00000005514.5\|UniProtKB=M3W473	Felis catus	LDO
CANLF\|Ensembl=ENSCAFG00845007763.1\|UniProtKB=A0A8I3N4S1	Canis lupus familiaris	LDO
MONDO\|Ensembl=ENSMODG00000004444.3\|UniProtKB=F6RSY7	Monodelphis domestica	LDO
ORNAN\|Ensembl=ENSOANG00000012190.3\|UniProtKB=F7FVS0	Ornithorhynchus anatinus	LDO
CHICK\|Ensembl=ENSGALG00010027948.1\|UniProtKB=A0A8V1AGK5	Gallus gallus	LDO
ANOCA\|Ensembl=ENSACAG00000015110.4\|UniProtKB=A0A803T3K5	Anolis carolinensis	LDO
XENLA\|Gene=prpf4.L\|UniProtKB=A0A1L8F5Q2	Xenopus laevis	LDO
XENTR\|Xenbase=XB-GENE-493298\|UniProtKB=Q6P8A5	Xenopus tropicalis	LDO
ORYLA\|Ensembl=ENSORLG00000019641.2\|UniProtKB=H2MZD4	Oryzias latipes	LDO
DANRE\|ZFIN=ZDB-GENE-030131-5143\|UniProtKB=Q6PH45	Danio rerio	LDO
LEPOC\|Ensembl=ENSLOCG00000000581.1\|UniProtKB=W5LWY9	lepisosteus oculatus	LDO
CIOIN\|Ensembl=ENSCING00000001299.3\|UniProtKB=F6WWK0	Ciona intestinalis	LDO
BRAFL\|Gene=LOC118421259\|UniProtKB=A0A9J7LM63	Branchiostoma floridae	LDO
STRPU\|EnsemblGenome=LOC590747\|UniProtKB=A0A7M7PMP1	Strongylocentrotus purpuratus	LDO
CAEEL\|WormBase=WBGene00007972\|UniProtKB=Q93339	Caenorhabditis elegans	LDO
CAEBR\|WormBase=WBGene00033315\|UniProtKB=A8XF84	Caenorhabditis briggsae	LDO
PRIPA\|EnsemblGenome=WBGene00305085\|UniProtKB=A0A8R1Z6X8	Pristionchus pacificus	LDO
DROME\|FlyBase=FBgn0036733\|UniProtKB=Q9VVI0	Drosophila melanogaster	LDO
ANOGA\|EnsemblGenome=AGAP002144\|UniProtKB=Q7QK43	Anopheles gambiae	LDO
TRICA\|EnsemblGenome=TC000271\|UniProtKB=D6WBF5	Tribolium castaneum	LDO
DAPPU\|EnsemblGenome=DAPPUDRAFT_299967\|UniProtKB=E9FRG9	Daphnia pulex	LDO
IXOSC\|EnsemblGenome=ISCW017325\|UniProtKB=B7P9Z1	Ixodes scapularis	O
IXOSC\|EnsemblGenome=ISCW014239\|UniProtKB=B7QJT1	Ixodes scapularis	LDO
HELRO\|EnsemblGenome=HelroG105872\|UniProtKB=T1EDY0	helobdella robusta	LDO
NEMVE\|EnsemblGenome=NEMVEDRAFT_v1g241701\|UniProtKB=A7RZ49	Nematostella vectensis	LDO
TRIAD\|EnsemblGenome=TriadG21736\|UniProtKB=B3RNA4	Trichoplax adhaerens	LDO
MONBE\|EnsemblGenome=MONBRDRAFT_37807\|UniProtKB=A9V3J2	Monosiga brevicollis	LDO
YEAST\|SGD=S000006382\|UniProtKB=P20053	Saccharomyces cerevisiae	LDO
EREGS\|EnsemblGenome=AGOS_AEL269C\|UniProtKB=Q758V7	Eremothecium gossypii	LDO
CANAL\|CGD=CAL0000188618\|UniProtKB=A0A1D8PU02	Candida albicans	LDO
YARLI\|EnsemblGenome=YALI0_E28226g\|UniProtKB=Q6C4B6	Yarrowia lipolytica	LDO
EMENI\|EnsemblGenome=ANIA_01468\|UniProtKB=Q5BDB2	Emericella nidulans	LDO
ASPFU\|EnsemblGenome=AFUA_8G04590\|UniProtKB=Q4WCF6	Neosartorya fumigata	LDO
NEUCR\|EnsemblGenome=NCU11251\|UniProtKB=V5IRK9	Neurospora crassa	LDO
SCLS1\|EnsemblGenome=SS1G_01423\|UniProtKB=A7E7Z5	Sclerotinia sclerotiorum	LDO
PHANO\|EnsemblGenome=SNOG_04483\|UniProtKB=Q0UUT1	Phaeosphaeria nodorum	LDO
SCHPO\|PomBase=SPAC227.12\|UniProtKB=Q9UTC7	Schizosaccharomyces pombe	LDO
SCHJY\|EnsemblGenome=SJAG_00531\|UniProtKB=B6JVW5	Schizosaccharomyces japonicus	LDO
CRYNJ\|EnsemblGenome=CND05530\|UniProtKB=Q5KHR9	Cryptococcus neoformans	LDO
USTMA\|EnsemblGenome=UMAG_05432\|UniProtKB=A0A0D1CHJ8	Ustilago maydis	LDO
PUCGT\|EnsemblGenome=PGTG_02141\|UniProtKB=E3JXA5	Puccinia graminis	LDO
BATDJ\|Gene_ORFName=BATDEDRAFT_9970\|UniProtKB=F4NYN0	Batrachochytrium dendrobatidis	LDO
ENTH1\|EnsemblGenome=CL6EHI_040300\|UniProtKB=C4M2F9	Entamoeba histolytica	LDO
DICDI\|dictyBase=DDB_G0287635\|UniProtKB=Q54K20	Dictyostelium discoideum	LDO
DICPU\|EnsemblGenome=DICPUDRAFT_78987\|UniProtKB=F0ZL79	Dictyostelium purpureum	LDO
LEIMA\|EnsemblGenome=LMJF_21_1120\|UniProtKB=Q4QC84	Leishmania major	LDO
TRYB2\|Gene_ORFName=Tb10.70.7190\|UniProtKB=Q38CE4	Trypanosoma brucei	LDO
TRIV3\|Gene_ORFName=TVAG_403650\|UniProtKB=A2ELP3	Trichomonas vaginalis	O
TRIV3\|Gene_ORFName=TVAG_063230\|UniProtKB=A2DLT5	Trichomonas vaginalis	LDO
PLAF7\|EnsemblGenome=PF3D7_1343900\|UniProtKB=C0H5G7	Plasmodium falciparum	LDO
PARTE\|EnsemblGenome=GSPATT00012568001\|UniProtKB=A0D1X6	Paramecium tetraurelia	O
PARTE\|EnsemblGenome=GSPATT00037851001\|UniProtKB=A0CF45	Paramecium tetraurelia	LDO
THAPS\|EnsemblGenome=THAPSDRAFT_260891\|UniProtKB=B8BQI8	Thalassiosira pseudonana	LDO
PHYRM\|Gene=H3GS79_PHYRM\|UniProtKB=H3GS79	Phytophthora ramorum	LDO
CHLRE\|EnsemblGenome=CHLRE_16g662800v5\|UniProtKB=A0A2K3CTM4	Chlamydomonas reinhardtii	LDO
AMBTC\|EnsemblGenome=AMTR_s00002p00265600\|UniProtKB=W1P0F9	Amborella trichopoda	LDO
ZOSMR\|Gene_ORFName=ZOSMA_174G00370\|UniProtKB=A0A0K9PSA6	Zostera marina	LDO
MUSAM\|EnsemblGenome=Ma11_g18720\|UniProtKB=A0A804L9C1	Musa acuminata subsp. malaccensis	LDO
SETIT\|EnsemblGenome=SETIT_035163mg\|UniProtKB=K4A8F7	Setaria italica	LDO
SORBI\|EnsemblGenome=SORBI_3001G370300\|UniProtKB=C5WZR9	Sorghum bicolor	LDO
MAIZE\|EnsemblGenome=Zm00001eb017050\|UniProtKB=A0A1D6K3B8	Zea mays	LDO
ORYSJ\|EnsemblGenome=Os03g0355200\|UniProtKB=Q10LA2	Oryza sativa	LDO
BRADI\|EnsemblGenome=BRADI_1g62257v3\|UniProtKB=I1H5E6	Brachypodium distachyon	LDO
HORVV\|EnsemblGenome=HORVU.MOREX.r3.2HG0127160\|UniProtKB=A0A8I7B5F0	Hordeum vulgare subsp. vulgare	O
WHEAT\|EnsemblGenome=TraesCS2A02G175200\|UniProtKB=A0A3B6AV20	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS2D02G182600\|UniProtKB=A0A3B6D9P3	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS2B02G201600\|UniProtKB=A0A3B6C2Q3	Triticum aestivum	O
HORVV\|EnsemblGenome=HORVU.MOREX.r3.4HG0365000\|UniProtKB=F2DGM0	Hordeum vulgare subsp. vulgare	LDO
WHEAT\|EnsemblGenome=TraesCS4D02G160600\|UniProtKB=A0A3B6JHS3	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS4A02G149100\|UniProtKB=A0A3B6HWG3	Triticum aestivum	O
WHEAT\|EnsemblGenome=TraesCS4B02G163800\|UniProtKB=A0A3B6IP52	Triticum aestivum	LDO
NELNU\|Gene_ORFName=HUJ06_001810\|UniProtKB=A0A1U7ZW44	Nelumbo nucifera	LDO
SPIOL\|Gene=LOC110775559\|UniProtKB=A0A9R0JIL2	Spinacia oleracea	LDO
HELAN\|Gene_ORFName=HanXRQr2_Chr17g0818671\|UniProtKB=A0A9K3DK23	Helianthus annuus	LDO
LACSA\|Gene_ORFName=LSAT_V11C400173630\|UniProtKB=A0A9R1XF16	Lactuca sativa	LDO
ERYGU\|Gene_ORFName=MIMGU_mgv1a003585mg\|UniProtKB=A0A022PSD0	Erythranthe guttata	LDO
CAPAN\|EnsemblGenome=T459_13627\|UniProtKB=A0A2G2ZF43	Capsicum annuum	LDO
SOLTU\|EnsemblGenome=PGSC0003DMG400012703\|UniProtKB=M1AYL0	Solanum tuberosum	LDO
SOLLC\|EnsemblGenome=Solyc04g016510.3\|UniProtKB=A0A3Q7G2B1	Solanum lycopersicum	LDO
TOBAC\|Gene=LOC107801611\|UniProtKB=A0A1S4AUP3	Nicotiana tabacum	LDO
TOBAC\|Gene=LOC107800703\|UniProtKB=A0A1S4ASC6	Nicotiana tabacum	LDO
VITVI\|Gene_OrderedLocusName=VIT_08s0007g05930\|UniProtKB=F6HLM8	Vitis vinifera	LDO
EUCGR\|EnsemblGenome=EUGRSUZ_A02297\|UniProtKB=A0A059DHR1	Eucalyptus grandis	LDO
BRANA\|Gene_ORFName=GSBRNA2T00024262001\|UniProtKB=A0A078GBL0	Brassica napus	O
BRACM\|EnsemblGenome=Bra004625\|UniProtKB=M4CK91	Brassica campestris	O
BRANA\|Gene_ORFName=GSBRNA2T00084638001\|UniProtKB=A0A078FNQ1	Brassica napus	LDO
BRACM\|EnsemblGenome=Bra016929\|UniProtKB=M4DKA0	Brassica campestris	LDO
ARATH\|TAIR=locus=2063349\|UniProtKB=Q9SIB8	Arabidopsis thaliana	O
ARATH\|TAIR=locus=2060560\|UniProtKB=O22212	Arabidopsis thaliana	LDO
GOSHI\|Gene=LOC107929465\|UniProtKB=A0A1U8LPA1	Gossypium hirsutum	O
GOSHI\|Gene=LOC107929129\|UniProtKB=A0A1U8LMY9	Gossypium hirsutum	LDO
THECC\|EnsemblGenome=TCM_007489\|UniProtKB=A0A061E961	Theobroma cacao	LDO
CITSI\|Gene_ORFName=CISIN_1g008050mg\|UniProtKB=A0A067DL85	Citrus sinensis	LDO
POPTR\|EnsemblGenome=POPTR_006G045800v3\|UniProtKB=A0A2K1ZWR7	Populus trichocarpa	LDO
MANES\|EnsemblGenome=MANES_09G015900\|UniProtKB=A0A2C9V8N1	Manihot esculenta	LDO
RICCO\|Gene_ORFName=RCOM_0255520\|UniProtKB=B9SVT1	Ricinus communis	LDO
SOYBN\|EnsemblGenome=GLYMA_02G190600\|UniProtKB=I1JGD6	Glycine max	O
SOYBN\|EnsemblGenome=GLYMA_10G000800\|UniProtKB=I1L7B7	Glycine max	LDO
MEDTR\|EnsemblGenome=MTR_5g022690\|UniProtKB=G7JXL0	Medicago truncatula	O
MEDTR\|EnsemblGenome=MTR_3g045130\|UniProtKB=A0A072V5R5	Medicago truncatula	LDO
JUGRE\|EnsemblGenome=Jr03_05200\|UniProtKB=A0A6P9EP78	Juglans regia	LDO
CUCSA\|EnsemblGenome=Csa_6G404170\|UniProtKB=A0A0A0KHD8	Cucumis sativus	LDO
PRUPE\|EnsemblGenome=PRUPE_7G050300\|UniProtKB=A0A251N6V4	Prunus persica	LDO
SELML\|EnsemblGenome=SELMODRAFT_81344\|UniProtKB=D8QZK5	Selaginella moellendorffii	LDO
SELML\|EnsemblGenome=SELMODRAFT_442802\|UniProtKB=D8RWA3	Selaginella moellendorffii	LDO
PHYPA\|EnsemblGenome=Pp3c9_11970\|UniProtKB=A0A2K1K2V4	Physcomitrella patens	LDO
MARPO\|EnsemblGenome=MARPO_0013s0144\|UniProtKB=A0A2R6XIP1	Marchantia polymorpha	O
MARPO\|EnsemblGenome=MARPO_0312s0002\|UniProtKB=A0A2R6VZ32	Marchantia polymorpha	O
MARPO\|EnsemblGenome=MARPO_0014s0154\|UniProtKB=A0A2R6XHR2	Marchantia polymorpha	O
MARPO\|EnsemblGenome=MARPO_0061s0123\|UniProtKB=A0A2R6WSP6	Marchantia polymorpha	LDO
KLENI\|Gene_ORFName=KFL_000020700\|UniProtKB=A0A1Y1HKQ5	Klebsormidium nitens	LDO